TCONS_00027042-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027042-protein
Unique NameTCONS_00027042-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027042-protein ID=TCONS_00027042-protein|Name=TCONS_00027042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MDEFIDELLHEERSCDIILPRIQKRYLLEDSEQLEPRISALEDDLNDLES
DDEPEMKEDSPRRRSVSPEDRRRRSRSPDRRRRSRSRSRSNSPKRRSRRS
PSPSRHRRHRSRSRSRSRSPRHSRRHRSRSRSPRRSRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015190XLOC_015190Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027042TCONS_00027042Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024767PRP38_C
IPR005037PRP38
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 31..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..138
IPR024767Pre-mRNA-splicing factor 38, C-terminalPFAMPF12871PRP38_assoccoord: 36..136
e-value: 1.2E-5
score: 25.7
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 1..31
e-value: 4.2E-6
score: 26.6

Blast
[Close]
BLAST of TCONS_00027042-protein vs. Swiss-Prot (Human)
Match: PR38A (Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.565e-20
Identity = 35/45 (77.78%), Postives = 43/45 (95.56%), Query Frame = 0 
Query:    1 MDEFIDELLHEERSCDIILPRIQKRYLLEDSEQLEPRISALEDDL 45
            +DEFIDELLH ER CDIILPR+QKRY+LE++EQLEPR+SALE+D+
Sbjct:  144 VDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDM 188
The following BLAST results are available for this feature:
BLAST of TCONS_00027042-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PR38A8.565e-2077.78Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PR... [more]
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