TCONS_00027313-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027313-protein
Unique NameTCONS_00027313-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027313-protein ID=TCONS_00027313-protein|Name=TCONS_00027313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MRDNALPYHNTKRPIIMAMFSGPGPACVGRLGLDNGPKYSFGLKPGQRVD
AFTPGPAAYTVHDKSTRFGSDGSPKYTLHSRTKQGNSFTTPGPAAYSTEK
VKIFKQPTPPSYSFGSRTRFNKRDGSPAPNAYTVPPIFGSKTPTKRSAPA
YVMTGRGRVGGFSEDLSKTPGPGTYKVNDPNSWKHRAPSYSISGRFMMPG
DSTQKPGPAHYSPHKQRSGTGPSFGVRHSEYTAPVLFSTC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015374XLOC_015374Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027313TCONS_00027313Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010736SHIPPO-rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010736Sperm-tail PG-rich repeatPFAMPF07004SHIPPO-rptcoord: 169..195
e-value: 4.8E-7
score: 30.3
coord: 206..227
e-value: 0.43
score: 11.5
coord: 90..119
e-value: 1.2E-4
score: 22.8
coord: 53..83
e-value: 0.033
score: 15.0
coord: 126..156
e-value: 1.5
score: 9.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..140

Blast
[Close]
BLAST of TCONS_00027313-protein vs. Swiss-Prot (Human)
Match: ODF3A (Outer dense fiber protein 3 OS=Homo sapiens GN=ODF3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.450e-39
Identity = 89/238 (37.39%), Postives = 126/238 (52.94%), Query Frame = 0 
Query:   16 IMAMFSGPGPACV-----GRLGLD----NGPKYSFGLKPGQRVDAFTPGPAAYTVHDKSTRFGSDGSPKYTLHSRTKQGNSFTTPGPAAYSTEKVKIFKQPTPPSYSFGSRTRFNKRDGSPAPNAYTVPPIFGSKTPTKRSAPAYVMTGRGRVGGFSEDLSKTPGPGTYKVNDPNSWKHRAPSYSISGRFMMPGDSTQKPGPAHYSPHKQRSGTGP-----SFGVRHSEYTAPVLFST 239
            IMA++S PGP  +     G +         P YSF   P    +  +PGP  Y V+ K  R G D  P Y++  R  Q  +  TPGP  Y  EK   +   + PS+S  +RT+  + D +P P AY +P + G  T  K S P++ + GR ++GGFS+DL KTPGP  Y+  D    K +AP Y+++ R   PGD T KPGP  +SP K  + T P     +FG++HS+Y  P+L   
Sbjct:   19 IMALYSSPGPKYLIPPTTGFMKHTPTKLRAPAYSFRGAPMLLAENCSPGPR-YNVNPKILRTGKDLGPAYSILGRY-QTKTMLTPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKV-TLTKPCAPVVTFGIKHSDYMTPLLVDV 253
The following BLAST results are available for this feature:
BLAST of TCONS_00027313-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ODF3A9.450e-3937.39Outer dense fiber protein 3 OS=Homo sapiens GN=ODF... [more]
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