TCONS_00027313-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027313-protein
Unique Name	TCONS_00027313-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	240

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027313-protein ID=TCONS_00027313-protein|Name=TCONS_00027313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MRDNALPYHNTKRPIIMAMFSGPGPACVGRLGLDNGPKYSFGLKPGQRVD
AFTPGPAAYTVHDKSTRFGSDGSPKYTLHSRTKQGNSFTTPGPAAYSTEK
VKIFKQPTPPSYSFGSRTRFNKRDGSPAPNAYTVPPIFGSKTPTKRSAPA
YVMTGRGRVGGFSEDLSKTPGPGTYKVNDPNSWKHRAPSYSISGRFMMPG
DSTQKPGPAHYSPHKQRSGTGPSFGVRHSEYTAPVLFSTC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015374	XLOC_015374	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027313	TCONS_00027313	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010736	SHIPPO-rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010736	Sperm-tail PG-rich repeat	PFAM	PF07004	SHIPPO-rpt	coord: 169..195 e-value: 4.8E-7 score: 30.3 coord: 206..227 e-value: 0.43 score: 11.5 coord: 90..119 e-value: 1.2E-4 score: 22.8 coord: 53..83 e-value: 0.033 score: 15.0 coord: 126..156 e-value: 1.5 score: 9.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..140

Blast

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BLAST of TCONS_00027313-protein vs. Swiss-Prot (Human)
Match: ODF3A (Outer dense fiber protein 3 OS=Homo sapiens GN=ODF3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.450e-39
Identity = 89/238 (37.39%), Postives = 126/238 (52.94%), Query Frame = 0

Query:   16 IMAMFSGPGPACV-----GRLGLD----NGPKYSFGLKPGQRVDAFTPGPAAYTVHDKSTRFGSDGSPKYTLHSRTKQGNSFTTPGPAAYSTEKVKIFKQPTPPSYSFGSRTRFNKRDGSPAPNAYTVPPIFGSKTPTKRSAPAYVMTGRGRVGGFSEDLSKTPGPGTYKVNDPNSWKHRAPSYSISGRFMMPGDSTQKPGPAHYSPHKQRSGTGP-----SFGVRHSEYTAPVLFST 239
            IMA++S PGP  +     G +         P YSF   P    +  +PGP  Y V+ K  R G D  P Y++  R  Q  +  TPGP  Y  EK   +   + PS+S  +RT+  + D +P P AY +P + G  T  K S P++ + GR ++GGFS+DL KTPGP  Y+  D    K +AP Y+++ R   PGD T KPGP  +SP K  + T P     +FG++HS+Y  P+L   
Sbjct:   19 IMALYSSPGPKYLIPPTTGFMKHTPTKLRAPAYSFRGAPMLLAENCSPGPR-YNVNPKILRTGKDLGPAYSILGRY-QTKTMLTPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKV-TLTKPCAPVVTFGIKHSDYMTPLLVDV 253

The following BLAST results are available for this feature:

BLAST of TCONS_00027313-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027313-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ODF3A	9.450e-39	37.39	Outer dense fiber protein 3 OS=Homo sapiens GN=ODF...	[more]

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TCONS_00027313-protein (polypeptide) - C. hemisphaerica