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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00027410-protein ID=TCONS_00027410-protein|Name=TCONS_00027410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=750bp
MVISSGMPGPRPEITTVFVGNITDKASDTLIRQILMKCGSIVSWKRVQGA
SGRLQGFGFCEYSDPEAALRAMRLLSGFQVADKKLLVKVDSKTREQLDKY
KEQKKIEKEVLVGHALEDFDIEKDASTKETDSGLMKEIDRLIRNHASEID
SQVLHNYRKTHSGNTENLQGLDMNDDTKSLVAKEIRGFRETYKDDKKKER
DRSREKSRDRDRDDRPKDKDRKDRDRDRSREKSRDRDREREKEREKDRER
EKDREREKDREREKDRERERRDRDRDAEKEKRDREKEREREREREKERER
EKERERDREQRDRERRRREREERDERDVRDRDRRREGSGTPSRSRRSRSP
RERGDEDDDALDSKRMERIRRDKENFYMEKLKEWEARERKKIRDYEKIAE
KDSRKNKDEDEEKFRLREFLEDYDDDRDDFKFYKSNALARRMRDRELEIQ
SDARDKQREMEEIEEILRKQMAGESVEPKTKRHPVTGATSGFMPHHNHQN
IESEYSREGSEPLNPNMRPAGFSAIQSEDNSPADDTRSPSPMERQDSFSS
VTNTTTTASMNQRDGSMSPSNASTKKFGFGMKIGTNVSNKNKLGTIFNAN
DDDTNVVDDGPKKKLSRLDDESSTKETNGDSGTKEPSVDEKRKMIKNLIE
KIPTVKEELFKYTLKWDIVDEALVDKRIKPWVNKKIFEYIGEEEQTLVEF
ICSKVLSKCNAKDILEDVAMVLDDESEVFVVKMWRLLIYETEAKKLGLVK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006397 | mRNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006397 |
mRNA processing |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 238..258 |
| None | No IPR available | COILS | Coil | Coil | coord: 274..331 |
| None | No IPR available | COILS | Coil | Coil | coord: 638..658 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 4..111
e-value: 4.6E-18
score: 64.9 |
| None | No IPR available | GENE3D | 1.20.1390.10 | | coord: 632..750
e-value: 1.4E-30
score: 105.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 468..573 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 193..372 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 596..639 |
| IPR002483 | PWI domain | SMART | SM00311 | pwi_2 | coord: 670..743
e-value: 2.0E-24
score: 97.1 |
| IPR002483 | PWI domain | PFAM | PF01480 | PWI | coord: 677..742
e-value: 9.4E-13
score: 48.2 |
| IPR002483 | PWI domain | PROSITE | PS51025 | PWI | coord: 657..750
score: 33.928 |
| IPR002483 | PWI domain | SUPERFAMILY | 101233 | PWI domain | coord: 676..742 |
| IPR000504 | RNA recognition motif domain | SMART | SM00360 | rrm1_1 | coord: 16..88
e-value: 3.9E-15
score: 66.3 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 17..85
e-value: 3.9E-11
score: 42.5 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 15..92
score: 13.652 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 9..93 |
| IPR034268 | RBM25, RNA recognition motif | CDD | cd12446 | RRM_RBM25 | coord: 15..97
e-value: 1.0755E-38
score: 137.741 |
Blast
The following BLAST results are available for this feature:
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