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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027410 ID=TCONS_00027410|Name=TCONS_00027410|organism=Clytia hemisphaerica|type=transcript|length=3143bpRun BLAST on NCBI protein sequence of TCONS_00027410-protein >TCONS_00027410-protein ID=TCONS_00027410-protein|Name=TCONS_00027410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=750bp MVISSGMPGPRPEITTVFVGNITDKASDTLIRQILMKCGSIVSWKRVQGARun BLAST on NCBI transcript from alignment at sc0000626:10014..24264+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027410 ID=TCONS_00027410|Name=TCONS_00027410|organism=Clytia hemisphaerica|type=transcript|length=14251bp|location=Sequence derived from alignment at sc0000626:10014..24264+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000626:10014..24264+ >TCONS_00027410 ID=TCONS_00027410|Name=TCONS_00027410|organism=Clytia hemisphaerica|type=CDS|length=36048bp|location=Sequence derived from alignment at sc0000626:10014..24264+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027410 vs. Swiss-Prot (Human)
Match: RBM25 (RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3) HSP 1 Score: 177.563 bits (449), Expect = 1.437e-45 Identity = 97/184 (52.72%), Postives = 126/184 (68.48%), Query Frame = 1
Query: 2359 KFGFGMKIGTNVS---------NKNKLGTIFNAXXXXXXXXXXGPKKKLSRLDDESSTKETNGDSGTKEPSVDEKRKMIKNLIEKIPTVKEELFKYTLKWDIVDEALVDKRIKPWVNKKIFEYIGEEEQTLVEFICSKVLSKCNAKDILEDVAMVLDDESEVFVVKMWRLLIYETEAKKLGLVK 2883
K G +K+G + S K + ++FN +D+ + K+KL LD K N GT + +EKRK IK+LIEKIPT K ELF Y L W IVD L+++RI+PW+NKKI EYIGEEE TLV+F+CSKV++ + + IL+DVAMVLD+E+EVF+VKMWRLLIYETEAKK+GLVK
Sbjct: 665 KIGLSLKLGASNSPGQPNSVKRKKLPVDSVFNKFEDEDSDDVPR-KRKLVPLDYGEDDK--NATKGTV--NTEEKRKHIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLVK 843 HSP 2 Score: 157.532 bits (397), Expect = 3.049e-39 Identity = 85/202 (42.08%), Postives = 124/202 (61.39%), Query Frame = 1
Query: 676 TTVFVGNITDKASDTLIRQILMKCGSIVSWKRVQGASGRLQGFGFCEYSDPEAALRAMRLLSGFQVADKKLLVKVDSKTREQLDKYKEQKKIEKEVLVGHALEDFDIEK-DASTKETDSGLMKEIDRLIRNHASEIDSQVLHN---------------YRKTHSG--------NTENLQGLDMNDDTKSLVAKEIRGFRETY 1209
TTVFVGNI++KASD LIRQ+L KCG ++SWKRVQGASG+LQ FGFCEY +PE+ LRA+RLL Q+ +KKLLVKVD+KT+ QLD++K +KK + + D E D TK D + I+ LIR ++SE+++ + +R+ E++ ++M +D + L+++EI FR+T+
Sbjct: 87 TTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKLLVKVDAKTKAQLDEWKAKKKASNGNARPETVTNDDEEALDEETKRRDQMIKGAIEVLIREYSSELNAPSQESDSHPRKKKKEKKEDIFRRFPVAPLIPYPLITKEDINAIEMEEDKRDLISREISKFRDTH 288 The following BLAST results are available for this feature:
BLAST of TCONS_00027410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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