TCONS_00027487-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027487-protein
Unique NameTCONS_00027487-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027487-protein ID=TCONS_00027487-protein|Name=TCONS_00027487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
NDVTFTGAMSGEVFIWNSHSLSRIVKNVHSGPVFTMFTTVKDGLIVTGGK
EKGSDGKDCTPVKLWDQELKRCKSFQIGKPTSIKSVCRNTNKGLILVGTM
DNEIYEINEKSGNSKAIVEGHGDGEMWGLSSHPSQEIAVTASNDQSVRVW
DLASKHMLRKADMGYPVKCCCYSPDGGTIAVGLNTGELQLLDAESLKSVA
KKRDRNKPITVVSFSGDGKLIAVGTEDKSIDFYSVKPNIKRVGYCKNIPS
YVSQLDFSSDAKFIQVGETIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015490XLOC_015490Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027487TCONS_00027487Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR024977Apc4_WD40_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 18..66
e-value: 63.0
score: 5.6
coord: 111..151
e-value: 0.0015
score: 27.8
coord: 154..192
e-value: 9.0
score: 11.0
coord: 68..108
e-value: 220.0
score: 2.2
coord: 195..234
e-value: 0.17
score: 20.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 129..160
score: 10.308
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 221..269
e-value: 5.3E-6
score: 25.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 1..220
e-value: 2.0E-37
score: 128.2
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 137..200
e-value: 9.6E-5
score: 22.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 138..152
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 62..243
score: 10.97
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 5..267

Blast
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BLAST of TCONS_00027487-protein vs. Swiss-Prot (Human)
Match: EMAL6 (Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens GN=EML6 PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 7.293e-89
Identity = 134/271 (49.45%), Postives = 195/271 (71.96%), Query Frame = 0 
Query:    1 NDVTFTGAMSGEVFIWNSHSLSRIVKNVHSGPVFTMFTTVKDGLIVTGGKEKGSDGKDCTPVKLWDQELKRCKSFQI--GKPTS-IKSVCRNTNKGLILVGTMDNEIYEINEKSGNSKAIVEGHGDGEMWGLSSHPSQEIAVTASNDQSVRVWDLASKHMLRKADMGYPVKCCCYSPDGGTIAVGLNTGELQLLDAESLKSVAKKRDRNKPITVVSFSGDGKLIAVGTEDKSIDFYSVKP--NIKRVGYCKNIPSYVSQLDFSSDAKFIQV 266
            N++TFTGA++G+V++W  H L R+V   H+GPVFTM+TT++DGLIVTGGKE+ +  K+   VKLWDQE+KRC++FQ+  G+    ++SVCR   KG ILVGT D EI E+ EK+  S  +++GH +GE+WGL++HPS+++ ++ASND + R+WDLA K +L K  +G+  +C  YSPDG  +A+G+  GE  +L   SLK   KKRDR   I  +  S D + +AVG+ + ++DFY +    N+ R+GYCK+IPS+V Q+DFS+D K+IQV
Sbjct: 1566 NNLTFTGAINGDVYVWKDHFLIRLVAKAHTGPVFTMYTTLRDGLIVTGGKERPT--KEGGAVKLWDQEMKRCRAFQLETGQLVECVRSVCRG--KGKILVGTKDGEIIEVGEKNAASNILIDGHMEGEIWGLATHPSKDLFISASNDGTARIWDLADKKLLNKVSLGHAARCAAYSPDGEMVAIGMKNGEFVILLVNSLKVWGKKRDRKSAIQDIRISPDNRFLAVGSSEHTVDFYDLTQGTNLNRIGYCKDIPSFVIQMDFSADGKYIQV 1832

HSP 2 Score: 178.718 bits (452), Expect = 8.479e-51
Identity = 109/280 (38.93%), Postives = 164/280 (58.57%), Query Frame = 0 
Query:    2 DVTFTGAMSGEVFIWNSHSLSRIVKNVHSGPVFTMFTTVKDGLIVTGGKEKGSDGKDCTPVKLWDQELKRC-KSFQIGKP---TSIKSVCRNTN---------KGLILVGTMDNEIYEINEKSGNSKAIVEGHGDGEMWGLSSHPSQEIAVTASNDQSVRVWDLASKH-MLRKADMGYPVKCCCYSPDGGTIAVGLNTGELQLLDAESLKSVAKKRDRNKPITVVSFSGD-GKLIAVGTEDKSIDFYSVKPNIKRVGYCKNIPSYVSQLDFSSDAKFIQV 266
            D+ F+GA +G++FIW    L + VK  H GPVF M+    D   VTGGK    DG     V+LWD   +RC K++ I +    TS K +    N          G ILVGT + EI EI +KSG    +V+GH +GE+WGL++HP   I  T S+D+++R+W+L+++H ML    +    +CC +SPDG  +AVGLN G   +++A++++ +     R + I+ + FS D GK +AV + D  +D Y+V  + KRVG CK   SY++ +D+ S  K +QV
Sbjct:  876 DLVFSGAATGDIFIWKDILLLKTVK-AHDGPVFAMYAL--DKGFVTGGK----DG----IVELWDDMFERCLKTYAIKRSALSTSSKGLLLEDNPSIRAITLGHGHILVGTKNGEILEI-DKSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTLRIWELSAQHRMLAVRKLKKGGRCCAFSPDGKALAVGLNDGSFLVVNADTVEDMVSFHHRKEMISDIKFSKDTGKYLAVASHDNFVDIYNVLTS-KRVGICKGASSYITHIDWDSRGKLLQV 1142

HSP 3 Score: 175.252 bits (443), Expect = 1.290e-49
Identity = 91/274 (33.21%), Postives = 159/274 (58.03%), Query Frame = 0 
Query:    2 DVTFTGAMSGEVFIWNSHSLSRIVKNVHSGPVFTMFTTVKDGLIVTGGKEKGSDGKDCTPVKLWDQELKRCKSFQIG------KPTSIKSVCRNTNKGLILVGTMDNEIYE-INEKSGNSKAIVEGHGDGEMWGLSSHPSQEIAVTASNDQSVRVWDLASKHMLRKADMGYPVKCCCYSPDGGTIAVGLNTGELQLLDAESLKSVAKKRDRNKPITVVSFSGDGKLIAVGTEDKSIDFYSVKPNIKRVGYCKNIPSYVSQLDFSSDAKFIQVGE 268
            D+T++GA++G++++W   +L R ++  HS  +F+M+   ++G   TGG+    DG  C  ++LWD + K      +       K  SI+SVC   ++  +L GT D+EI+E I  +      I++GH +GE+W L+ HP + +AVT S+D+SVR+W LA   ++ + +M   V+   +SPDG  +A+G+  G   +L    +  V   +DR + I  + FS DG  +AVG+ D  +D Y+V    K++G C    S+++ +D+S D+K++Q  +
Sbjct:  209 DITYSGALNGDIYVWKGLNLVRTIQGAHSAGIFSMYA-CEEGF-ATGGR----DG--C--IRLWDTDFKPITKIDLRETEQGYKGLSIRSVCWKADR--LLAGTQDSEIFEVIVRERDKPMLILQGHCEGELWALALHPKKPLAVTGSDDRSVRLWSLADHALIARCNMEEAVRSVAFSPDGSQLALGMKDGSFIVLRVRDMTEVVHIKDRKEVIHEMKFSPDGSYLAVGSNDGPVDVYAVAQRYKKIGECSKSLSFITHIDWSLDSKYLQTND 470
The following BLAST results are available for this feature:
BLAST of TCONS_00027487-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMAL67.293e-8949.45Echinoderm microtubule-associated protein-like 6 O... [more]
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