TCONS_00027487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027487
Unique NameTCONS_00027487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027487 ID=TCONS_00027487|Name=TCONS_00027487|organism=Clytia hemisphaerica|type=transcript|length=916bp
GAACGATGTCACTTTCACCGGAGCAATGAGTGGAGAAGTTTTTATTTGGA
ATTCTCATTCTTTATCACGTATCGTGAAAAATGTTCATTCCGGTCCTGTT
TTTACCATGTTCACAACTGTTAAAGATGGCCTCATCGTCACCGGTGGTAA
AGAAAAAGGTTCTGACGGTAAAGATTGTACGCCAGTCAAGTTATGGGATC
AAGAATTGAAACGATGTAAATCATTCCAAATCGGAAAACCAACTTCCATC
AAATCTGTCTGTAGAAATACGAACAAGGGATTGATTCTGGTTGGTACGAT
GGATAACGAAATTTACGAAATCAACGAAAAGAGTGGCAACAGCAAAGCGA
TTGTTGAAGGACATGGAGACGGTGAGATGTGGGGCTTGAGTTCTCATCCT
TCACAAGAAATTGCTGTCACTGCCAGTAATGACCAATCAGTCAGAGTATG
GGACCTCGCTTCCAAGCATATGCTTCGTAAGGCAGACATGGGTTATCCAG
TCAAATGTTGCTGCTACTCCCCCGATGGTGGTACAATTGCAGTTGGACTC
AATACGGGTGAACTTCAACTCCTTGACGCAGAATCGTTGAAAAGCGTTGC
TAAGAAACGAGATCGCAATAAACCAATAACTGTTGTCAGtttttctggTG
ATGGCAAACTTATAGCGGTCGGTACTGAAGACAAATCCATCGATTTCTAC
TCCGTTAAACCAAACATCAAAAGAGTTGGCTACTGTAAAAATATACCTAG
CTATGTTTCCCAGCTCGATTTCTCAAGCGATGCCAAGTTTATCCAGGTAG
GTGAAACAATTTCTTAATTTTATTGATTAAGGAGGAAGGATTTCGGTGCA
AATAAGGCTACTGCCTGGTAAGAGCACAATCTTCTGATGATAGGCAATCT
TACTTACGGATCGTCA
Run BLAST on NCBI

protein sequence of TCONS_00027487-protein

>TCONS_00027487-protein ID=TCONS_00027487-protein|Name=TCONS_00027487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
NDVTFTGAMSGEVFIWNSHSLSRIVKNVHSGPVFTMFTTVKDGLIVTGGK
EKGSDGKDCTPVKLWDQELKRCKSFQIGKPTSIKSVCRNTNKGLILVGTM
DNEIYEINEKSGNSKAIVEGHGDGEMWGLSSHPSQEIAVTASNDQSVRVW
DLASKHMLRKADMGYPVKCCCYSPDGGTIAVGLNTGELQLLDAESLKSVA
KKRDRNKPITVVSFSGDGKLIAVGTEDKSIDFYSVKPNIKRVGYCKNIPS
YVSQLDFSSDAKFIQVGETIS
Run BLAST on NCBI

transcript from alignment at sc0000630:135940..139717-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027487 ID=TCONS_00027487|Name=TCONS_00027487|organism=Clytia hemisphaerica|type=transcript|length=3778bp|location=Sequence derived from alignment at sc0000630:135940..139717- (Clytia hemisphaerica)
GAACGATGTCACTTTCACCGGAGCAATGAGTGGAGAAGTTTTTATTTGGA
ATTCTCATTCTTTATCACGTATCGTGAAAAATGTTCATTCCGGTCCTGTT
TTTACCATGTTCACAACTGTTAAAGATGGCCTCATCGTCACCGGTGGTAA
AGAAAAAGGGTATGACAAATATCTTGTAACATGAAAGTAATCTAATGTCA
TTGTTAATCAAAAGCGTTGAACTGAAGGATCATTTTATAGCCAAAGGTTC
AGGCAGGAGTCGCTTATTCTCTGGATTTCTTCTCTAAATCATAACCCTTC
GTGATTGCATACTTTACTTAAGCAGCATTAAGCAGAGTGGTGTCATGGGC
TATTTTTCTTTCCTAACAATCTGTTGGGGTCTGAAGGATTGATAATAACC
TAAAGAACTCATGACAGACTAAAGAACCGATGCCAGGCTAAAGGACCGAT
TATAGGCTATTTCGACTTGACGATCTCTTTGTTTTTTGGACCTACCCCGG
TGGAGGTCCTATAAATTAACCTTTGTCCGTTCGTCTGTTCGTTCGTTCGT
TCGTTTGTTATTAGCTTTCCTCAAGATTGACTCGTTAGTTTTTTCTGATT
TTTTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGCCCGA
CTTTCAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTGTGACGGAGCCCGATTTTCAAAA
AAAAAATTTTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGTT
TTTTGGACTTTGTGAAAAATTAGTTCGTTAATTTTTTCTGATTTTTTGCA
TGAAAGTAGGGTACTATCGTAGGTAAAAGATGGCTTAAGCGAATTTTTGC
AAAAAAATTTTATTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACT
ATTCATAAGCATACATCAATGTTCTTAGTCAAATAACTCAATTTTTTGTA
TGAGATAGATGTTTTTTTTGCTCACGAAGGCTTACTTTTAAAGAATATAT
GTGTTTAGACATGTTTTCATAGAAAAGCTAGCCAAATTCGATATTTTTTT
ATAAGCACACTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTC
TTTTATTCTTTATGATTTTTTGCACAAAGATGCATAACTATAAACCCTCG
AATGTGACGGAGCTCGATTCTTGGAAAAAAAAAATCTGGGGTAAATTTCA
GCTAAAAAGAGATGTTTTTTTGCTCTCGAAGTCTTGAATATGAAAGAATA
GAGCATGAAATTTTGGTTTCTAAACGTGTTTTTTTATAAGAAACAAACGA
CTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAATGG
TCACACTTATGTAGATATCAATTATATATGTGTTAAATGCATAACCAGGT
AGGTCCATAAAAGTATCACTTGTTCTTTTCAGTTCTGACGGTAAAGATTG
TACGCCAGTCAAGTTATGGGATCAAGAATTGAAACGATGTAAATCATTCC
AAATCGGAAAACCAACTTCCATCAAATCTGTCTGTAGAAATACGAACAAG
GTATGTCTTTCATTACACACTTAATCAACCTTTTAAGCATGGGGAGGCTG
GGTTCGAGTTTACCAGGGAGGAATGCTGTCAAAATGTTTTGAGTCATTGT
ATTGACATCCTTACAGACAAAATTATGAAGGTTCATTGAATGAGCACTCG
AAAAAACCAGGCGTTTCCAAATAATTCATACGAAATAAAGCATATTTTTA
TACCATCCTTCCTCTTTGGTTTCAGAATAAATATTTTCGGACTTTCCTTC
TCATGTGTGGATGAAATATTTGAAGCATCCATGTTGTCTAACGGTTTACT
TATGTTCTTAGGGATTGATTCTGGTTGGTACGATGGATAACGAAATTTAC
GAAATCAACGAAAAGAGTGGCAACAGCAAAGTAAGCTTCTTTATTTCTCC
TTGGATTCCATGAAGTATTCCTAAGTTAGGTGAAGTTTTTAAAAAGGTCA
TCATGAATAAATTTGCCCTTTCGAGAGTTGATGGGGAGATATATTATTGT
TAGCTAAGTTTCCTAGGAAAGGGTTTTTTTTTAATGTTCATACGTTCTGT
CAACGAATTTCACCTAACAATCCACATTCTGGATTCTTGACCTTGAAAGA
CTGGATTCTCGGTGTTCGCGGTGTAGATGTGCTTTCTCATTCTGCAATAC
AGTTATACTAAATCGGACCTGAAACAACACAGAAAAAAGCCAGTATTCTC
ATAAGCCAGCCATTTGTCTTTATTCCACCAACAGGCGATTGTTGAAGGAC
ATGGAGACGGTGAGATGTGGGGCTTGAGTTCTCATCCTTCACAAGAAATT
GCTGTCACTGCCAGTAATGACCAATCAGTCAGAGTATGGGACCTCGCTTC
CAAGGTTGGTTCTCTCCAAATTCATTCTTTTAAGGGGCATCATTTAACAG
CATTTTAAACAAAAGAGAAAACGTTAGGAGCTTCGCGCCTCGCGAGTATA
AATTTTGAGAACTTCTATTGTTTATTCTGCATTCTTAGCATAAAGACCTT
TTTTGTATATCACGAAAAATAATACGTTTAAGACAAATTCAAAACCCTTG
TTCTGCCTATATGTATTAAAGAGTCTGGGGCGATTAAGTAGAATTTGCCT
GTATACCAGTGCCTGAGGAATTTTTAAGCTAGTTTTGTTTGTTCTATTAG
TTTCGAAATATCCGTTCGGAGTATGAGATATGTACACCTCCTTTTGCGAA
TACCTCATTAAGAAGGACTTTATTGCATATAAGTTTTATCGCTAAAAGTT
ACAAACGGGAATTTCATGAAACAAATTGAAATTTTAGATTTTGTTTCAAT
TCAATATTACACGGCAAACTTTGACACAAGAATTTAAAACCCATGGCATT
CTTTCCTTTGTAGCATATGCTTCGTAAGGCAGACATGGGTTATCCAGTCA
AATGTTGCTGCTACTCCCCCGATGGTGGTACAATTGCAGTTGGACTCAAT
ACGGGTGAACTTCAACTCCTTGACGCAGAATCGTTGAAAAGCGTTGCTAA
GAAACGAGATCGCAATAAACCAATAACTGTTGTCAGGTAACGAGGCATTC
GATTTCCTAAATCTTTCATTATTATTACTTCAGTAGATTCTCTATTACCC
AAACCTGTCTCCTCGACTTGAACTATTTGTCTACCCCTTTCTCTTCAGCT
AGCAAATCCTAATAAACCAGTCCCTGAATTTTGATATCCCCATAACTCGA
ACAAGATTTCGTACCTCGGTCTATGGTGTTTAAGGTATCCAAGATATTTA
AGAACCCTTTTGAGATAGTAAATCAATTCTCAGCATCAGCTTTGTAGAAT
ATTCTCAAGGAATTGTTTGATATTAGATACGCTATTATTGTTTCCACTTT
ATAGCAAAAATTAGTGCACTCCTCGAATAGTCTCCTTAATTTTTTTCTCA
GTTTTTCTGGTGATGGCAAACTTATAGCGGTCGGTACTGAAGACAAATCC
ATCGATTTCTACTCCGTTAAACCAAACATCAAAAGAGTTGGCTACTGTAA
AAATATACCTAGCTATGTTTCCCAGCTCGATTTCTCAAGCGATGCCAAGT
TTATCCAGGTAGGTGAAACAATTTCTTAATTTTATTGATTAAGGAGGAAG
GATTTCGGTGCAAATAAGGCTACTGCCTGGTAAGAGCACAATCTTCTGAT
GATAGGCAATCTTACTTACGGATCGTCA

Coding sequence (CDS) from alignment at sc0000630:135940..139717-

>TCONS_00027487 ID=TCONS_00027487|Name=TCONS_00027487|organism=Clytia hemisphaerica|type=CDS|length=4896bp|location=Sequence derived from alignment at sc0000630:135940..139717- (Clytia hemisphaerica)
TTTTTCTGGTGATGGCAAACTTATAGCGGTCGGTACTGAAGACAAATCCA
TCGATTTCTACTCCGTTAAACCAAACATCAAAAGAGTTGGCTACTGTAAA
AATATACCTAGCTATGTTTCCCAGCTCGATTTCTCAAGCGATGCCAAGTT
TATCCAGGTAGGTGAAACAATTTCTTAACATATGCTTCGTAAGGCAGACA
TGGGTTATCCAGTCAAATGTTGCTGCTACTCCCCCGATGGTGGTACAATT
GCAGTTGGACTCAATACGGGTGAACTTCAACTCCTTGACGCAGAATCGTT
GAAAAGCGTTGCTAAGAAACGAGATCGCAATAAACCAATAACTGTTGTCA
GGCGATTGTTGAAGGACATGGAGACGGTGAGATGTGGGGCTTGAGTTCTC
ATCCTTCACAAGAAATTGCTGTCACTGCCAGTAATGACCAATCAGTCAGA
GTATGGGACCTCGCTTCCAAGGGATTGATTCTGGTTGGTACGATGGATAA
CGAAATTTACGAAATCAACGAAAAGAGTGGCAACAGCAAATTCTGACGGT
AAAGATTGTACGCCAGTCAAGTTATGGGATCAAGAATTGAAACGATGTAA
ATCATTCCAAATCGGAAAACCAACTTCCATCAAATCTGTCTGTAGAAATA
CGAACAAGAACGATGTCACTTTCACCGGAGCAATGAGTGGAGAAGTTTTT
ATTTGGAATTCTCATTCTTTATCACGTATCGTGAAAAATGTTCATTCCGG
TCCTGTTTTTACCATGTTCACAACTGTTAAAGATGGCCTCATCGTCACCG
GTGGTAAAGAAAAAGGTTTTTCTGGTGATGGCAAACTTATAGCGGTCGGT
ACTGAAGACAAATCCATCGATTTCTACTCCGTTAAACCAAACATCAAAAG
AGTTGGCTACTGTAAAAATATACCTAGCTATGTTTCCCAGCTCGATTTCT
CAAGCGATGCCAAGTTTATCCAGGTAGGTGAAACAATTTCTTAACATATG
CTTCGTAAGGCAGACATGGGTTATCCAGTCAAATGTTGCTGCTACTCCCC
CGATGGTGGTACAATTGCAGTTGGACTCAATACGGGTGAACTTCAACTCC
TTGACGCAGAATCGTTGAAAAGCGTTGCTAAGAAACGAGATCGCAATAAA
CCAATAACTGTTGTCAGGCGATTGTTGAAGGACATGGAGACGGTGAGATG
TGGGGCTTGAGTTCTCATCCTTCACAAGAAATTGCTGTCACTGCCAGTAA
TGACCAATCAGTCAGAGTATGGGACCTCGCTTCCAAGGGATTGATTCTGG
TTGGTACGATGGATAACGAAATTTACGAAATCAACGAAAAGAGTGGCAAC
AGCAAATTCTGACGGTAAAGATTGTACGCCAGTCAAGTTATGGGATCAAG
AATTGAAACGATGTAAATCATTCCAAATCGGAAAACCAACTTCCATCAAA
TCTGTCTGTAGAAATACGAACAAGAACGATGTCACTTTCACCGGAGCAAT
GAGTGGAGAAGTTTTTATTTGGAATTCTCATTCTTTATCACGTATCGTGA
AAAATGTTCATTCCGGTCCTGTTTTTACCATGTTCACAACTGTTAAAGAT
GGCCTCATCGTCACCGGTGGTAAAGAAAAAGGTTTTTCTGGTGATGGCAA
ACTTATAGCGGTCGGTACTGAAGACAAATCCATCGATTTCTACTCCGTTA
AACCAAACATCAAAAGAGTTGGCTACTGTAAAAATATACCTAGCTATGTT
TCCCAGCTCGATTTCTCAAGCGATGCCAAGTTTATCCAGGTAGGTGAAAC
AATTTCTTAACATATGCTTCGTAAGGCAGACATGGGTTATCCAGTCAAAT
GTTGCTGCTACTCCCCCGATGGTGGTACAATTGCAGTTGGACTCAATACG
GGTGAACTTCAACTCCTTGACGCAGAATCGTTGAAAAGCGTTGCTAAGAA
ACGAGATCGCAATAAACCAATAACTGTTGTCAGGCGATTGTTGAAGGACA
TGGAGACGGTGAGATGTGGGGCTTGAGTTCTCATCCTTCACAAGAAATTG
CTGTCACTGCCAGTAATGACCAATCAGTCAGAGTATGGGACCTCGCTTCC
AAGGGATTGATTCTGGTTGGTACGATGGATAACGAAATTTACGAAATCAA
CGAAAAGAGTGGCAACAGCAAATTCTGACGGTAAAGATTGTACGCCAGTC
AAGTTATGGGATCAAGAATTGAAACGATGTAAATCATTCCAAATCGGAAA
ACCAACTTCCATCAAATCTGTCTGTAGAAATACGAACAAGAACGATGTCA
CTTTCACCGGAGCAATGAGTGGAGAAGTTTTTATTTGGAATTCTCATTCT
TTATCACGTATCGTGAAAAATGTTCATTCCGGTCCTGTTTTTACCATGTT
CACAACTGTTAAAGATGGCCTCATCGTCACCGGTGGTAAAGAAAAAGGTT
TTTCTGGTGATGGCAAACTTATAGCGGTCGGTACTGAAGACAAATCCATC
GATTTCTACTCCGTTAAACCAAACATCAAAAGAGTTGGCTACTGTAAAAA
TATACCTAGCTATGTTTCCCAGCTCGATTTCTCAAGCGATGCCAAGTTTA
TCCAGGTAGGTGAAACAATTTCTTAACATATGCTTCGTAAGGCAGACATG
GGTTATCCAGTCAAATGTTGCTGCTACTCCCCCGATGGTGGTACAATTGC
AGTTGGACTCAATACGGGTGAACTTCAACTCCTTGACGCAGAATCGTTGA
AAAGCGTTGCTAAGAAACGAGATCGCAATAAACCAATAACTGTTGTCAGG
CGATTGTTGAAGGACATGGAGACGGTGAGATGTGGGGCTTGAGTTCTCAT
CCTTCACAAGAAATTGCTGTCACTGCCAGTAATGACCAATCAGTCAGAGT
ATGGGACCTCGCTTCCAAGGGATTGATTCTGGTTGGTACGATGGATAACG
AAATTTACGAAATCAACGAAAAGAGTGGCAACAGCAAATTCTGACGGTAA
AGATTGTACGCCAGTCAAGTTATGGGATCAAGAATTGAAACGATGTAAAT
CATTCCAAATCGGAAAACCAACTTCCATCAAATCTGTCTGTAGAAATACG
AACAAGAACGATGTCACTTTCACCGGAGCAATGAGTGGAGAAGTTTTTAT
TTGGAATTCTCATTCTTTATCACGTATCGTGAAAAATGTTCATTCCGGTC
CTGTTTTTACCATGTTCACAACTGTTAAAGATGGCCTCATCGTCACCGGT
GGTAAAGAAAAAGGTTTTTCTGGTGATGGCAAACTTATAGCGGTCGGTAC
TGAAGACAAATCCATCGATTTCTACTCCGTTAAACCAAACATCAAAAGAG
TTGGCTACTGTAAAAATATACCTAGCTATGTTTCCCAGCTCGATTTCTCA
AGCGATGCCAAGTTTATCCAGGTAGGTGAAACAATTTCTTAACATATGCT
TCGTAAGGCAGACATGGGTTATCCAGTCAAATGTTGCTGCTACTCCCCCG
ATGGTGGTACAATTGCAGTTGGACTCAATACGGGTGAACTTCAACTCCTT
GACGCAGAATCGTTGAAAAGCGTTGCTAAGAAACGAGATCGCAATAAACC
AATAACTGTTGTCAGGCGATTGTTGAAGGACATGGAGACGGTGAGATGTG
GGGCTTGAGTTCTCATCCTTCACAAGAAATTGCTGTCACTGCCAGTAATG
ACCAATCAGTCAGAGTATGGGACCTCGCTTCCAAGGGATTGATTCTGGTT
GGTACGATGGATAACGAAATTTACGAAATCAACGAAAAGAGTGGCAACAG
CAAATTCTGACGGTAAAGATTGTACGCCAGTCAAGTTATGGGATCAAGAA
TTGAAACGATGTAAATCATTCCAAATCGGAAAACCAACTTCCATCAAATC
TGTCTGTAGAAATACGAACAAGAACGATGTCACTTTCACCGGAGCAATGA
GTGGAGAAGTTTTTATTTGGAATTCTCATTCTTTATCACGTATCGTGAAA
AATGTTCATTCCGGTCCTGTTTTTACCATGTTCACAACTGTTAAAGATGG
CCTCATCGTCACCGGTGGTAAAGAAAAAGGTTTTTCTGGTGATGGCAAAC
TTATAGCGGTCGGTACTGAAGACAAATCCATCGATTTCTACTCCGTTAAA
CCAAACATCAAAAGAGTTGGCTACTGTAAAAATATACCTAGCTATGTTTC
CCAGCTCGATTTCTCAAGCGATGCCAAGTTTATCCAGGTAGGTGAAACAA
TTTCTTAACATATGCTTCGTAAGGCAGACATGGGTTATCCAGTCAAATGT
TGCTGCTACTCCCCCGATGGTGGTACAATTGCAGTTGGACTCAATACGGG
TGAACTTCAACTCCTTGACGCAGAATCGTTGAAAAGCGTTGCTAAGAAAC
GAGATCGCAATAAACCAATAACTGTTGTCAGGCGATTGTTGAAGGACATG
GAGACGGTGAGATGTGGGGCTTGAGTTCTCATCCTTCACAAGAAATTGCT
GTCACTGCCAGTAATGACCAATCAGTCAGAGTATGGGACCTCGCTTCCAA
GGGATTGATTCTGGTTGGTACGATGGATAACGAAATTTACGAAATCAACG
AAAAGAGTGGCAACAGCAAATTCTGACGGTAAAGATTGTACGCCAGTCAA
GTTATGGGATCAAGAATTGAAACGATGTAAATCATTCCAAATCGGAAAAC
CAACTTCCATCAAATCTGTCTGTAGAAATACGAACAAGAACGATGTCACT
TTCACCGGAGCAATGAGTGGAGAAGTTTTTATTTGGAATTCTCATTCTTT
ATCACGTATCGTGAAAAATGTTCATTCCGGTCCTGTTTTTACCATGTTCA
CAACTGTTAAAGATGGCCTCATCGTCACCGGTGGTAAAGAAAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015490XLOC_015490Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027487-proteinTCONS_00027487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027487-exon-sc0000630-1575043694:139559..139717TCONS_00027487-exon-sc0000630-1575043694:139559..139717Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1575043694:138118..138235TCONS_00027487-exon-sc0000630-1575043694:138118..138235Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1575043694:137738..137806TCONS_00027487-exon-sc0000630-1575043694:137738..137806Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1575043694:137264..137383TCONS_00027487-exon-sc0000630-1575043694:137264..137383Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1575043694:136582..136754TCONS_00027487-exon-sc0000630-1575043694:136582..136754Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1575043694:135940..136216TCONS_00027487-exon-sc0000630-1575043694:135940..136216Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1510915933:139559..139717TCONS_00027487-exon-sc0000630-1510915933:139559..139717Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1510915933:138118..138235TCONS_00027487-exon-sc0000630-1510915933:138118..138235Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1510915933:137738..137806TCONS_00027487-exon-sc0000630-1510915933:137738..137806Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1510915933:137264..137383TCONS_00027487-exon-sc0000630-1510915933:137264..137383Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1510915933:136582..136754TCONS_00027487-exon-sc0000630-1510915933:136582..136754Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1510915933:135940..136216TCONS_00027487-exon-sc0000630-1510915933:135940..136216Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1491911889:139559..139717TCONS_00027487-exon-sc0000630-1491911889:139559..139717Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1491911889:138118..138235TCONS_00027487-exon-sc0000630-1491911889:138118..138235Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1491911889:137738..137806TCONS_00027487-exon-sc0000630-1491911889:137738..137806Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1491911889:137264..137383TCONS_00027487-exon-sc0000630-1491911889:137264..137383Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1491911889:136582..136754TCONS_00027487-exon-sc0000630-1491911889:136582..136754Clytia hemisphaericaexon
TCONS_00027487-exon-sc0000630-1491911889:135940..136216TCONS_00027487-exon-sc0000630-1491911889:135940..136216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000630supercontigsc0000630:135940..139717 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.5596	15.561	10.5112	11.6176	31.1289	25.454	13.5482	14.556	13.4893	14.8231	13.2183	10.7947	9.87858	9.14993	11.5972	19.6315	12.4689	11.3902	7.52139	9.43354	10.4798	10.4363	10.7017	10.9325	9.7517	10.3861	10.1835	12.7774	13.2001	11.5762
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR024977Apc4_WD40_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00027487 vs. Swiss-Prot (Human)
Match: EMAL6 (Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens GN=EML6 PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 4.452e-87
Identity = 134/271 (49.45%), Postives = 195/271 (71.96%), Query Frame = 2 
Query:    2 NDVTFTGAMSGEVFIWNSHSLSRIVKNVHSGPVFTMFTTVKDGLIVTGGKEKGSDGKDCTPVKLWDQELKRCKSFQI--GKPTS-IKSVCRNTNKGLILVGTMDNEIYEINEKSGNSKAIVEGHGDGEMWGLSSHPSQEIAVTASNDQSVRVWDLASKHMLRKADMGYPVKCCCYSPDGGTIAVGLNTGELQLLDAESLKSVAKKRDRNKPITVVSFSGDGKLIAVGTEDKSIDFYSVKP--NIKRVGYCKNIPSYVSQLDFSSDAKFIQV 799
            N++TFTGA++G+V++W  H L R+V   H+GPVFTM+TT++DGLIVTGGKE+ +  K+   VKLWDQE+KRC++FQ+  G+    ++SVCR   KG ILVGT D EI E+ EK+  S  +++GH +GE+WGL++HPS+++ ++ASND + R+WDLA K +L K  +G+  +C  YSPDG  +A+G+  GE  +L   SLK   KKRDR   I  +  S D + +AVG+ + ++DFY +    N+ R+GYCK+IPS+V Q+DFS+D K+IQV
Sbjct: 1566 NNLTFTGAINGDVYVWKDHFLIRLVAKAHTGPVFTMYTTLRDGLIVTGGKERPT--KEGGAVKLWDQEMKRCRAFQLETGQLVECVRSVCRG--KGKILVGTKDGEIIEVGEKNAASNILIDGHMEGEIWGLATHPSKDLFISASNDGTARIWDLADKKLLNKVSLGHAARCAAYSPDGEMVAIGMKNGEFVILLVNSLKVWGKKRDRKSAIQDIRISPDNRFLAVGSSEHTVDFYDLTQGTNLNRIGYCKDIPSFVIQMDFSADGKYIQV 1832

HSP 2 Score: 178.333 bits (451), Expect = 3.828e-49
Identity = 109/281 (38.79%), Postives = 164/281 (58.36%), Query Frame = 2 
Query:    2 NDVTFTGAMSGEVFIWNSHSLSRIVKNVHSGPVFTMFTTVKDGLIVTGGKEKGSDGKDCTPVKLWDQELKRC-KSFQIGKP---TSIKSVCRNTN---------KGLILVGTMDNEIYEINEKSGNSKAIVEGHGDGEMWGLSSHPSQEIAVTASNDQSVRVWDLASKH-MLRKADMGYPVKCCCYSPDGGTIAVGLNTGELQLLDAESLKSVAKKRDRNKPITVVSFSGD-GKLIAVGTEDKSIDFYSVKPNIKRVGYCKNIPSYVSQLDFSSDAKFIQV 799
             D+ F+GA +G++FIW    L + VK  H GPVF M+    D   VTGGK    DG     V+LWD   +RC K++ I +    TS K +    N          G ILVGT + EI EI +KSG    +V+GH +GE+WGL++HP   I  T S+D+++R+W+L+++H ML    +    +CC +SPDG  +AVGLN G   +++A++++ +     R + I+ + FS D GK +AV + D  +D Y+V  + KRVG CK   SY++ +D+ S  K +QV
Sbjct:  875 EDLVFSGAATGDIFIWKDILLLKTVK-AHDGPVFAMYAL--DKGFVTGGK----DG----IVELWDDMFERCLKTYAIKRSALSTSSKGLLLEDNPSIRAITLGHGHILVGTKNGEILEI-DKSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTLRIWELSAQHRMLAVRKLKKGGRCCAFSPDGKALAVGLNDGSFLVVNADTVEDMVSFHHRKEMISDIKFSKDTGKYLAVASHDNFVDIYNVLTS-KRVGICKGASSYITHIDWDSRGKLLQV 1142

HSP 3 Score: 175.252 bits (443), Expect = 5.542e-48
Identity = 91/275 (33.09%), Postives = 159/275 (57.82%), Query Frame = 2 
Query:    2 NDVTFTGAMSGEVFIWNSHSLSRIVKNVHSGPVFTMFTTVKDGLIVTGGKEKGSDGKDCTPVKLWDQELKRCKSFQIG------KPTSIKSVCRNTNKGLILVGTMDNEIYE-INEKSGNSKAIVEGHGDGEMWGLSSHPSQEIAVTASNDQSVRVWDLASKHMLRKADMGYPVKCCCYSPDGGTIAVGLNTGELQLLDAESLKSVAKKRDRNKPITVVSFSGDGKLIAVGTEDKSIDFYSVKPNIKRVGYCKNIPSYVSQLDFSSDAKFIQVGE 805
             D+T++GA++G++++W   +L R ++  HS  +F+M+   ++G   TGG+    DG  C  ++LWD + K      +       K  SI+SVC   ++  +L GT D+EI+E I  +      I++GH +GE+W L+ HP + +AVT S+D+SVR+W LA   ++ + +M   V+   +SPDG  +A+G+  G   +L    +  V   +DR + I  + FS DG  +AVG+ D  +D Y+V    K++G C    S+++ +D+S D+K++Q  +
Sbjct:  208 EDITYSGALNGDIYVWKGLNLVRTIQGAHSAGIFSMYA-CEEGF-ATGGR----DG--C--IRLWDTDFKPITKIDLRETEQGYKGLSIRSVCWKADR--LLAGTQDSEIFEVIVRERDKPMLILQGHCEGELWALALHPKKPLAVTGSDDRSVRLWSLADHALIARCNMEEAVRSVAFSPDGSQLALGMKDGSFIVLRVRDMTEVVHIKDRKEVIHEMKFSPDGSYLAVGSNDGPVDVYAVAQRYKKIGECSKSLSFITHIDWSLDSKYLQTND 470
The following BLAST results are available for this feature:
BLAST of TCONS_00027487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMAL64.452e-8749.45Echinoderm microtubule-associated protein-like 6 O... [more]
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