TCONS_00027729-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027729-protein
Unique Name	TCONS_00027729-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	461

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027729-protein ID=TCONS_00027729-protein|Name=TCONS_00027729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp
MVEHEQGKTFSFKVSSKATKTTLTDHGKDSHFKYSKTGEEDKDYILSAEG
QELKSSKPKKEKNKLVIPLIKTNDWRSDDKEAINEILADLRNGESNDAEK
ELQPILMKNRVPKRNTDKEDSLNDIDIRPDESTADDYEDVPIGAFGSAML
RGMGWKEGQGIGKTNKVMIEPIEYIPRHKGLGLGAEKRNETSKSTRKRKL
GEDKESHDKYKPIIDEDGRVRHIKAVGEQVQSSKPVGYYPGSKVQILKGP
HKELYGKIISVDEDNARVSVKLAISGEQIQISQYNTSLMDSETYKRYSMQ
KPGRKPEKVDKRAGRDETDFKKKRVKSTSDEESDIKLQDIWIVPGIRVRI
ISQSYKNGRYYNKKVKVLDVTTKDRCDCETDEKRLLEDIRQKDLETLIPK
NKGAYVCMVAGKYKGKFGKLLDRNKRDSTADIQLTSNKRITTLSYDDICE
YVDRLPDDDFL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015649	XLOC_015649	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027729	TCONS_00027729	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000467	G_patch_dom
IPR005824	KOW
IPR014722	Rib_L2_dom2
IPR026822	Spp2/MOS2_G-patch
IPR008991	Translation_prot_SH3-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 140..186 e-value: 1.9E-11 score: 54.0
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 142..188 score: 13.434
IPR005824	KOW	SMART	SM00739	kow_9	coord: 237..264 e-value: 0.0063 score: 25.7 coord: 399..426 e-value: 0.1 score: 21.7
IPR005824	KOW	PFAM	PF00467	KOW	coord: 240..271 e-value: 2.6E-6 score: 27.1
IPR014722	Ribosomal protein L2 domain 2	GENE3D	2.30.30.30		coord: 375..435 e-value: 0.015 score: 14.9
IPR014722	Ribosomal protein L2 domain 2	GENE3D	2.30.30.30		coord: 234..284 e-value: 3.1E-7 score: 29.9
IPR026822	Spp2/MOS2, G-patch domain	PFAM	PF12656	G-patch_2	coord: 129..188 e-value: 1.0E-23 score: 83.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	CDD	cd13152	KOW_GPKOW_A	coord: 241..297 e-value: 4.53564E-20 score: 82.6206
None	No IPR available	CDD	cd13153	KOW_GPKOW_B	coord: 403..452 e-value: 1.32698E-16 score: 72.97
IPR008991	Translation protein SH3-like domain	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 228..271

Blast

[Close]

BLAST of TCONS_00027729-protein vs. Swiss-Prot (Human)
Match: GPKOW (G patch domain and KOW motifs-containing protein OS=Homo sapiens GN=GPKOW PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 7.081e-63
Identity = 147/482 (30.50%), Postives = 234/482 (48.55%), Query Frame = 0

Query:   10 FSFKVSSKATKTTLTDHGKDSHFKYSKTGEEDKDYILSAEGQELKSSKPKKEKNKLVIPLIKTNDWRSDDK------------------EAINEILAD----LRNGESNDAEKELQ-PILMKNRVPKRNTDKEDSLNDIDIRPDESTADDYEDVPIGAFGSAMLRGMGWKEGQGIGKTNKVMIEPIEYIPRHKGLGLGA---EKRNETSKSTRKRKLGEDKESHDKYKPIIDEDGRVRHIKAVGEQVQSSKPVGYYPGSKVQILKGPHKELYGKIISVDEDNARVSVKLAISGEQIQISQYNTSLMDSETYKRYSM---QKPGRKPEK-----VDKRAGRDETDFKKKRVKSTSD-----EESDIKLQDIWIVPGIRVRIISQSYKNGRYYNKKVKVLDVTTKDRCDCETDEKRLLEDIRQKDLETLIPKNKGAYVCMVAGKYKGKFGKLLDRNKRDSTADIQLTSNKRITTLSYDDICEYV 452
             SF  +  + +  L D G  +         E+KD++ + EG+EL+S KP++   +LVIPLI+    R                      +A+ E++A+    L   E+   +  L  P++ K   P  + +  DS    +  P+E+   +YE VP+ A+G AMLRGMGWK G+GIG+T   +++P     R KGLGLGA   E +  T     +    ++++  DK      ED                +P G  PG  V +L GPH+ LYGK+  +D DN R  V+LA+    + +S+Y    +  + + + ++   Q+ G    +      +    +D ++ K+K +    D      E        W+   +RVR +   YK G+YYN K+ + DV + D C C TDE R+LE +R+  LETL+PK +G  V +V G   G+ G LL R++  S A +QL    ++  L YD IC+Y+
Sbjct:   19 ISFGFTRTSARRRLADSGDGA-----GPSPEEKDFLKTVEGRELQSVKPQEAPKELVIPLIQNGHRRQPPARPPGPSTDTGALADGVVSQAVKELIAESKKSLEERENAGVDPTLAIPMIQKGCTP--SGEGADSEPRAETVPEEA---NYEAVPVEAYGLAMLRGMGWKPGEGIGRTFNQVVKPRVNSLRPKGLGLGANLTEAQALTPTGPSRMPRPDEEQEKDK------ED----------------QPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTVSEYYLRPVSQQEFDKNTLDLRQQNGTASSRKTLWNQELYIQQDNSERKRKHLPDRQDGPAAKSEKAAPRSQHWLHRDLRVRFVDNMYKGGQYYNTKMIIEDVLSPDTCVCRTDEGRVLEGLREDMLETLVPKAEGDRVMVVLGPQTGRVGHLLSRDRARSRALVQLPRENQVVELHYDAICQYM 468

The following BLAST results are available for this feature:

BLAST of TCONS_00027729-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027729-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GPKOW	7.081e-63	30.50	G patch domain and KOW motifs-containing protein O...	[more]

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TCONS_00027729-protein (polypeptide) - C. hemisphaerica