|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027729 ID=TCONS_00027729|Name=TCONS_00027729|organism=Clytia hemisphaerica|type=transcript|length=1876bpRun BLAST on NCBI protein sequence of TCONS_00027729-protein >TCONS_00027729-protein ID=TCONS_00027729-protein|Name=TCONS_00027729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp MVEHEQGKTFSFKVSSKATKTTLTDHGKDSHFKYSKTGEEDKDYILSAEGRun BLAST on NCBI transcript from alignment at sc0000642:174014..195953- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027729 ID=TCONS_00027729|Name=TCONS_00027729|organism=Clytia hemisphaerica|type=transcript|length=21940bp|location=Sequence derived from alignment at sc0000642:174014..195953- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000642:174014..195953- >TCONS_00027729 ID=TCONS_00027729|Name=TCONS_00027729|organism=Clytia hemisphaerica|type=CDS|length=19404bp|location=Sequence derived from alignment at sc0000642:174014..195953- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027729 vs. Swiss-Prot (Human)
Match: GPKOW (G patch domain and KOW motifs-containing protein OS=Homo sapiens GN=GPKOW PE=1 SV=2) HSP 1 Score: 182.57 bits (462), Expect = 4.262e-50 Identity = 147/482 (30.50%), Postives = 234/482 (48.55%), Query Frame = 3
Query: 81 FSFKVSSKATKTTLTDHGKDSHFKYSKTGEEDKDYILSAEGQXXXXXXXXXXXXXXVIPLIKTNDWRSDD------------------KEAINEILAD----LRNGESNDAEKELQ-PILMKNRVPKRNTDKEDSLNDIDIRPDESTADDYEDVPIGAFGSAMLRGMGWKEGQGIGKTNKVMIEPIEYIPRHKGLGLGA---EKRNETSKSTRKRKLGEDKESHDKYKPIIDEDGRVRHIKAVGEQVQSSKPVGYYPGSKVQILKGPHKELYGKIISVDEDNARVSVKLAISGEQIQISQYNTSLMDSETYKRYSM---QKPGRKPEK-----VDKRAGRDETDFKKKRVKSTSD-----EESDIKLQDIWIVPGIRVRIISQSYKNGRYYNXXXXXXXXXXXXRCDCETDEKRLLEDIRQKDLETLIPKNKGAYVCMVAGKYKGKFGKLLDRNKRDSTADIQLTSNKRITTLSYDDICEYV 1409
SF + + + L D G + E+KD++ + EG+EL+S KP++ +LVIPLI+ R +A+ E++A+ L E+ + L P++ K P + + DS + P+E+ +YE VP+ A+G AMLRGMGWK G+GIG+T +++P R KGLGLGA E + T + ++++ DK ED +P G PG V +L GPH+ LYGK+ +D DN R V+LA+ + +S+Y + + + + ++ Q+ G + + +D ++ K+K + D E W+ +RVR + YK G+YYN K+ + DV + D C C TDE R+LE +R+ LETL+PK +G V +V G G+ G LL R++ S A +QL ++ L YD IC+Y+
Sbjct: 19 ISFGFTRTSARRRLADSGDGA-----GPSPEEKDFLKTVEGRELQSVKPQEAPKELVIPLIQNGHRRQPPARPPGPSTDTGALADGVVSQAVKELIAESKKSLEERENAGVDPTLAIPMIQKGCTP--SGEGADSEPRAETVPEEA---NYEAVPVEAYGLAMLRGMGWKPGEGIGRTFNQVVKPRVNSLRPKGLGLGANLTEAQALTPTGPSRMPRPDEEQEKDK------ED----------------QPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTVSEYYLRPVSQQEFDKNTLDLRQQNGTASSRKTLWNQELYIQQDNSERKRKHLPDRQDGPAAKSEKAAPRSQHWLHRDLRVRFVDNMYKGGQYYNTKMIIEDVLSPDTCVCRTDEGRVLEGLREDMLETLVPKAEGDRVMVVLGPQTGRVGHLLSRDRARSRALVQLPRENQVVELHYDAICQYM 468 The following BLAST results are available for this feature:
BLAST of TCONS_00027729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.