TCONS_00027865-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027865-protein
Unique Name	TCONS_00027865-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1288

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027865-protein ID=TCONS_00027865-protein|Name=TCONS_00027865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1288bp
MSNHLNNIPGKQDQQQFLEKLQEFHQARGTHLGRIPTFGGQVLDLHALYN
IVTSFGGISIVTERKKWDQVFTALGFPPCLNAAYALRQHYCRYLEAYEKI
YFFGEETEGSPSDPNRMAFPRVSRYKRMNGLPLITSVGEPLVQNFNRIMF
SLQSGYPNEVDFALNICSLLSNVTNSIFNLAKCPQILSLILGHVGVWCQD
GSFVEKLCEDWHGRKKNYHDFWTKSVEDQTALKVYNAGSLGHLYKDEAAE
ELFSLFNTIENKKFENNNTPECSRITQVLVILYNFSFETLNSLFISSHDA
AKRFLILAGCCKQNLIQRTALDTLDNIAEHVTIGRREDPFNQQFLQVLHN
FFMSSNKFKRLRGQSILAKLASTEDNKDILIELLSKDVYKRLIETLYLPD
ISLVLHALDTLYYLSALSRETSDGIVNVHGSISVLIALSTTRAESYGNQA
IEGYRIIENKLSIFSPKNQHWLKQQQAQQQARQQVQHRPLQPHHPGMPPQ
NLPHHIRGPSPLRTPTPQYSHPPVGPLGVPQFPGSPSKQQPKMPPPNNAP
RPPVHGSDGGGGEDIVELEDDVFTAHWMSGFYEPNKVVRLKAASIYNDYK
NTCTELKRSSPLSKEDFLAAIRTILPPDLVSFEMIDDDHILHGIQRRNPT
MQVHSRIPRIIYRQLVTTGQLKPKTHPIPSDIPKYNPAINPANPGPSQDQ
KASTMNLNTADECRAMLERLKKDIQGHFMNFHTQREYIQSFQSDASKSQM
PPHLMKDFQIRMQGHYQQMQMHFQKLQQLNTISEEVNRKLKSLEETKQPS
SVRLNGSSVNCQPVIVPPPAPLQDVQSINIQHEIPNESSSKGLNSSVKQQ
SNAIQTNGRLSGEKQKVTSNGHESPRKFDEADISVASPNTMDPAKPKVST
ESVTLSNPFGQFPHAEALKTLYKNNLKSRALSNSDLSQCETVKGLTNGNS
NGDVTCDTNCEDTPFEKLTFNGNHSPTGKENGVLLNGNCEDSSEEQSNCD
SNDTISNGKSKEIESRKRKVSENSLDFEGKKEKGDFVEEKEDEKSHDAID
PKNQMEATSIEEKTNNIQNNDRYIGSAEINTSTSPTDDGTPKDPPNEKPK
TTQPELMAEGFKTFWQLNGMNQLNGVYPCLWDRCSSQPFESSSNLLTHMI
DSHAPLEGKMSRCKVKGCSSNHKPRGILISHFQEKHCLCVDPNQVEKSKD
FQIHEESPVTRSIRYTSTLILRNLARNSTYGRQFLSKYESHIAQVAMSSS
EATLAAVDSLFEFNNQSILKDDIDLYESDEETIIMASS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015752	XLOC_015752	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027865	TCONS_00027865	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001606	ARID_dom
IPR011991	WHTH_DNA-bd_dom
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 776..796
None	No IPR available	SMART	SM01014	ARID_2	coord: 8..98 e-value: 4.3E-29 score: 112.7
None	No IPR available	GENE3D	1.10.150.60		coord: 2..118 e-value: 2.9E-30 score: 104.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 469..565
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 793..822
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 971..1103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 835..898
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 12..103 e-value: 1.4E-30 score: 117.6
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 14..98 e-value: 5.6E-22 score: 78.1
IPR001606	ARID DNA-binding domain	PROSITE	PS51011	ARID	coord: 11..102 score: 28.431
IPR001606	ARID DNA-binding domain	SUPERFAMILY	46774	ARID-like	coord: 3..107
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 574..630 e-value: 4.7E-6 score: 26.6
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 287..539 e-value: 4.5E-6 score: 25.3
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 268..428

Blast

[Close]

BLAST of TCONS_00027865-protein vs. Swiss-Prot (Human)
Match: ARID2 (AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.408e-79
Identity = 195/701 (27.82%), Postives = 330/701 (47.08%), Query Frame = 0

Query:   17 FLEKLQEFHQARGTHLGRIPTFGGQVLDLHALYNIVTSFGGISIVTERKKWDQVFTALGFP-PCLNAAYALRQHYCRYLEAYEKIYFFGEETEGSPSDPNRMAFP-------------RVSRYKRMN-GLPLITSVGEPLVQNFNRIMFSLQSGYPNEVDFALNICSLLSNVTNSIFNLAKCPQILSLILGHVGVWCQD-GSFVEKLCEDWHGRK-KNYHDFWTKSVEDQTALKVYNAGSLGHLYKDEAAEELF-SLFNTIENKKFENNNTPECSRITQVLVILYNFSFETLNSLFISSHDAAKRFLILAGCCKQNLIQRTALDTLDNIAEHVTIGRREDPFNQQFLQVLHNFFMSSNKFKRLRGQSILAKLASTEDNKDILIELLSKDVYKRLIETLYLPDISLVLHALDTLYYLSALSRETSDGIVNVHGSISVLIALSTTRAESYGNQAIEGYRIIENKLSIFSPKNQHWLKQQQAQQQARQQVQHRPLQPHHPGMPPQNLPHHIRGPSPLRTPTPQYSHPPVGPLGVPQFPGSPSKQQPKMPPPNNAPRPPVHGSDGGGGEDIVELEDDVFTAHWMSGFYEPNKVVRLKAASIYNDYKNTCTELKRSSPLSKEDFLAAIRTILPPDLVSFEMIDDDHILHGIQRRNPTMQVHSRIPRIIYRQLVTTGQLKPKTHPIPS------DIPKYNPAINPAN 693
            FL++L++FH +RG+   +IP  GG+ LDLH LY  VT+ GG + V+E+ +W ++     FP  C NAA+AL+Q+Y RYLE YEK++ FGE+ +  P    +   P              VS Y R + GL +      P   ++N+++ SL SG PNEVDFA+N+C+LLSN +  +  L K P+I++L+L + GV+    GSF     E+W  +  +++  FW   V+D     + +  +  H  +  + E ++ SLF+    +K   N+  E  R+ Q+ VIL N SFE  N   ++++    RFL+L+       +++  LDTL NIA  + +   +          +    MS ++F ++RG  IL  L   EDN  ++ E + +D Y+ +I  L LPD+ LV+  L+ LY L+ +       I  V  SI +L+ L +   + +G  A+   ++IE+      P + H +   + + QA +QVQ +                H+      R    Q+  PP G                                       IVE++ + F   W++  +E N    +  A +Y++Y +TC++L R   L+   F   +RT+ P           +H +  ++  +   Q H  +  +  R +    Q+  +  P+ +       +P  +PA +PA 
Sbjct:   19 FLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPSSYNYQQHSVSDYLRQSYGLSM--DFNSP--NDYNKLVLSLLSGLPNEVDFAINVCTLLSNESKHVMQLEKDPKIITLLLANAGVFDDTLGSFSTVFGEEWKEKTDRDFVKFWKDIVDDNEVRDLISDRNKSH--EGTSGEWIWESLFH--PPRKLGINDI-EGQRVLQIAVILRNLSFEEGNVKLLAANRTCLRFLLLSAHSHFISLRQLGLDTLGNIAAELLLDPVDFKTTHLMFHTVTKCLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTLEVLYMLTEMGDVACTKIAKVEKSIDMLVCLVSMDIQMFGPDALAAVKLIEH------PSSSHQML-SEIRPQAIEQVQTQ---------------THVASAPASRAVVAQHVAPPPG---------------------------------------IVEIDSEKFACQWLNAHFEVNPDCSVSRAEMYSEYLSTCSKLARGGILTSTGFYKCLRTVFP-----------NHTVKRVEDSSSNGQAHIHVVGVKRRAIPLPIQMYYQQQPVSTSVVRVDSVPDVSPAPSPAG 638

The following BLAST results are available for this feature:

BLAST of TCONS_00027865-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027865-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARID2	1.408e-79	27.82	AT-rich interactive domain-containing protein 2 OS...	[more]

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TCONS_00027865-protein (polypeptide) - C. hemisphaerica