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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027865 ID=TCONS_00027865|Name=TCONS_00027865|organism=Clytia hemisphaerica|type=transcript|length=5139bpRun BLAST on NCBI protein sequence of TCONS_00027865-protein >TCONS_00027865-protein ID=TCONS_00027865-protein|Name=TCONS_00027865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1288bp MSNHLNNIPGKQDQQQFLEKLQEFHQARGTHLGRIPTFGGQVLDLHALYNRun BLAST on NCBI transcript from alignment at sc0000649:59063..84823+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027865 ID=TCONS_00027865|Name=TCONS_00027865|organism=Clytia hemisphaerica|type=transcript|length=25761bp|location=Sequence derived from alignment at sc0000649:59063..84823+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000649:59063..84823+ >TCONS_00027865 ID=TCONS_00027865|Name=TCONS_00027865|organism=Clytia hemisphaerica|type=CDS|length=73473bp|location=Sequence derived from alignment at sc0000649:59063..84823+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027865 vs. Swiss-Prot (Human)
Match: ARID2 (AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 1.193e-66 Identity = 156/482 (32.37%), Postives = 256/482 (53.11%), Query Frame = 3
Query: 105 MSNHLNNIPGKQDQQ--QFLEKLQEFHQARGTHLGRIPTFGGQVLDLHALYNIVTSFGGISIVTERKKWDQVFTALGFP-PCLNAAYALRQHYCRYLEAYEKIYFFGEETEGSPSDPNRMAFP-------------RVSRYKRMN-GLPLITSVGEPLVQNFNRIMFSLQSGYPNEVDFALNICSLLSNVTNSIFNLAKCPQILSLILGHVGVWCQD-GSFVEKLCEDWHGRK-KNYHDFWTKSVEDQTALKVYNAGSLGHLYKDEAAEELF-SLFNTIENKKFENNNTPECSRITQVLVILYNFSFETLNSLFISSHDAAKRFLILAGCCKQNLIQRTALDTLDNIAEHVTIGRREDPFNQQFLQVLHNFFMSSNKFKRLRGQSILAKLASTEDNKDILIELLSKDVYKRLIETLYLPDISLVLHALDTLYYLSALSRETSDGIVNVHGSISVLIALSTTRAESYGNQAIEGYRIIENKLS 1490
M+N P + ++ FL++L++FH +RG+ +IP GG+ LDLH LY VT+ GG + V+E+ +W ++ FP C NAA+AL+Q+Y RYLE YEK++ FGE+ + P + P VS Y R + GL + P ++N+++ SL SG PNEVDFA+N+C+LLSN + + L K P+I++L+L + GV+ GSF E+W + +++ FW V+D + + + H + + E ++ SLF+ +K N+ E R+ Q+ VIL N SFE N ++++ RFL+L+ +++ LDTL NIA + + + + MS ++F ++RG IL L EDN ++ E + +D Y+ +I L LPD+ LV+ L+ LY L+ + I V SI +L+ L + + +G A+ ++IE+ S
Sbjct: 1 MANSTGKAPPDERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPSSYNYQQHSVSDYLRQSYGLSM--DFNSP--NDYNKLVLSLLSGLPNEVDFAINVCTLLSNESKHVMQLEKDPKIITLLLANAGVFDDTLGSFSTVFGEEWKEKTDRDFVKFWKDIVDDNEVRDLISDRNKSH--EGTSGEWIWESLFH--PPRKLGINDI-EGQRVLQIAVILRNLSFEEGNVKLLAANRTCLRFLLLSAHSHFISLRQLGLDTLGNIAAELLLDPVDFKTTHLMFHTVTKCLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTLEVLYMLTEMGDVACTKIAKVEKSIDMLVCLVSMDIQMFGPDALAAVKLIEHPSS 473 The following BLAST results are available for this feature:
BLAST of TCONS_00027865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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