TCONS_00027894-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027894-protein
Unique NameTCONS_00027894-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027894-protein ID=TCONS_00027894-protein|Name=TCONS_00027894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MLTPTSIRLFIMDEADKLLEKGSFEEQINWIYSALPKEKQMLALSATYPE
VLAQHLNNYMTNPIHVRINPKDVALTGVVQFKRLVKHHTLPNKLFEEKYK
VLIEILKKLTFQQCMVFSNYHSRAEHLSRTLIKEGWPSTHIAGSQMQSDR
LKAIDKLKTFQCRILITTDLTARGIDCDKVNLVINLDIPWDAETYLHRVG
RAGRFGSQGIAISLVSSSGEEKYRLEEIARSISRELTPLPEKYLKESTDR
V
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015765XLOC_015765Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027894TCONS_00027894Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 125..206
e-value: 8.1E-24
score: 95.1
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 97..206
e-value: 2.8E-24
score: 85.5
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 101..247
score: 20.288
NoneNo IPR availableGENE3D3.40.50.300coord: 91..250
e-value: 2.5E-36
score: 124.0
NoneNo IPR availableGENE3D3.40.50.300coord: 1..73
e-value: 4.0E-10
score: 38.7
NoneNo IPR availableCDDcd00079HELICccoord: 85..214
e-value: 1.60384E-32
score: 115.798
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 6..51
e-value: 1.1E-6
score: 28.5
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 11..19
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..66
score: 11.666
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..224

Blast
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BLAST of TCONS_00027894-protein vs. Swiss-Prot (Human)
Match: DDX20 (Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens GN=DDX20 PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.805e-87
Identity = 131/240 (54.58%), Postives = 177/240 (73.75%), Query Frame = 0 
Query:    2 LTPTSIRLFIMDEADKLLEKGSFEEQINWIYSALPKEKQMLALSATYPEVLAQHLNNYMTNPIHVRINPKDVALTGVVQFKRLVKHHTLPNKLFEEKYKVLIEILKKLTFQQCMVFSNYHSRAEHLSRTLIKEGWPSTHIAGSQMQSDRLKAIDKLKTFQCRILITTDLTARGIDCDKVNLVINLDIPWDAETYLHRVGRAGRFGSQGIAISLVSSSGEEKYRLEEIARSISRELTPLPE 241
            L P SIRLFI+DEADKLLE+GSF+EQINWIYS+LP  KQMLA+SATYPE LA  L  YM +P  VR+N  D +L G+ Q+ ++V  + L +K+FEEK + L E+  ++ F Q +VFSN HSRA+HL+  L  +G+P+  I+G+  Q+ RL A+ KLK F CR+LI+TDLT+RGID +KVNLV+NLD+P D ETY+HR+GRAGRFG+ G+ ++     GEE+  +  IA+  +  L PLP+
Sbjct:  200 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYC-CRGEEENMMMRIAQKCNINLLPLPD 438
The following BLAST results are available for this feature:
BLAST of TCONS_00027894-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX201.805e-8754.58Probable ATP-dependent RNA helicase DDX20 OS=Homo ... [more]
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