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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027894 ID=TCONS_00027894|Name=TCONS_00027894|organism=Clytia hemisphaerica|type=transcript|length=1094bpRun BLAST on NCBI protein sequence of TCONS_00027894-protein >TCONS_00027894-protein ID=TCONS_00027894-protein|Name=TCONS_00027894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp MLTPTSIRLFIMDEADKLLEKGSFEEQINWIYSALPKEKQMLALSATYPERun BLAST on NCBI transcript from alignment at sc0000653:113916..143341+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027894 ID=TCONS_00027894|Name=TCONS_00027894|organism=Clytia hemisphaerica|type=transcript|length=29426bp|location=Sequence derived from alignment at sc0000653:113916..143341+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000653:113916..143341+ >TCONS_00027894 ID=TCONS_00027894|Name=TCONS_00027894|organism=Clytia hemisphaerica|type=CDS|length=5292bp|location=Sequence derived from alignment at sc0000653:113916..143341+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027894 vs. Swiss-Prot (Human)
Match: DDX20 (Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens GN=DDX20 PE=1 SV=2) HSP 1 Score: 275.789 bits (704), Expect = 2.561e-84 Identity = 131/240 (54.58%), Postives = 177/240 (73.75%), Query Frame = 3
Query: 6 LTPTSIRLFIMDEADKLLEKGSFEEQINWIYSALPKEKQMLALSATYPEVLAQHLNNYMTNPIHVRINPKDVALTGVVQFKRLVKHHTLPNKLFEEKYKVLIEILKKLTFQQCMVFSNYHSRAEHLSRTLIKEGWPSTHIAGSQMQSDRLKAIDKLKTFQCRILITTDLTARGIDCDKVNLVINLDIPWDAETYLHRVGRAGRFGSQGIAISLVSSSGEEKYRLEEIARSISRELTPLPE 725
L P SIRLFI+DEADKLLE+GSF+EQINWIYS+LP KQMLA+SATYPE LA L YM +P VR+N D +L G+ Q+ ++V + L +K+FEEK + L E+ ++ F Q +VFSN HSRA+HL+ L +G+P+ I+G+ Q+ RL A+ KLK F CR+LI+TDLT+RGID +KVNLV+NLD+P D ETY+HR+GRAGRFG+ G+ ++ GEE+ + IA+ + L PLP+
Sbjct: 200 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYC-CRGEEENMMMRIAQKCNINLLPLPD 438 The following BLAST results are available for this feature:
BLAST of TCONS_00027894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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