TCONS_00028072-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00028072-protein
Unique Name	TCONS_00028072-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	423

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00028072-protein ID=TCONS_00028072-protein|Name=TCONS_00028072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MEMLKILFCLTLCCFGVIAGEVMASLKNINMTNYEKVSLPYIAEQNKTVD
VNVSMYILNIGNLNTQEMTFEVEMYFGMKWKDPRLAFKEYNNASYALVTG
ETAYDNIWVPDLFIRNMKHVESSTFLKDLSGVMIYPDGIVSLSSRIRVVA
HCEMDLLMFPLDSQSCNLMIESYLYHTDVMKMYWAENPVVIDDRRDGRKT
EIDTWNGFTLEEVKTTEDSYIYPINKLEFKNMIATFVLKREPQYYILRGF
IPSSLLVCLTWASFWLPTSSYPARVALIVTSFLASIVLYQGSTLHSIQMT
VMQVFLFGNISFIMVTLMEFLMAVKADHEKKEKTELVPTIRNEIFNSANE
TQENEFWPKEKKNMTSAVDVGKNQTNENERKSTTRNKEKTENSVDRKARF
IIPILYFIYVGVFVAALFFLNQE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015883	XLOC_015883	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00028072	TCONS_00028072	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006201	Neur_channel
IPR006028	GABAA/Glycine_rcpt
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 106..117 score: 44.65 coord: 71..87 score: 31.17 coord: 236..248 score: 33.87 coord: 152..166 score: 49.74
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 271..292 score: 34.71 coord: 245..265 score: 41.72
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 21..245 e-value: 1.3E-42 score: 145.2
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 31..242 e-value: 6.3E-37 score: 127.0
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 26..242
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 251..389 e-value: 5.2E-7 score: 29.9
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 242..419
None	No IPR available	GENE3D	1.20.58.390		coord: 246..423 e-value: 1.2E-23 score: 83.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 367..390
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 152..166

Blast

[Close]

BLAST of TCONS_00028072-protein vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.358e-34
Identity = 100/388 (25.77%), Postives = 190/388 (48.97%), Query Frame = 0

Query:   49 VDVNVSMYILNIGNLNTQEMTFEVEMYFGMKWKDPRLAFKEYNNASYALVTGETAYDNIWVPDLFIRNMKHVESSTFLKDLSG----VMIYPDGIVSLSSRIRVVAHCEMDLLMFPLDSQSCNLMIESYLYHTDVMKMYWAENPVVIDDRRDGRKT-EIDTWNGFTLEEVKTTEDSYIYPINKLEFKNMIATFVLKREPQYYILRGFIPSSLLVCLTWASFWLPTSSYPARVALIVTSFL--ASIVLYQGSTLHSIQ-MTVMQVFLFGNISFIMVTLME-----FLMAVKADHEKKEKTEL-----VPTIRNEIFNSA-NETQENEFWPKEKKNMTSAVDVGKNQTNENERKSTTRNKEKTE--------NSVDRKARFIIPILYFIY 409
            + V V + + ++ +++  +M F + +Y    WKD RL+F   NN S  +         IWVPD+F  + K     +F+ D +     + + PDG V  S R+ V A C MD   FPLD+Q+C+L IESY Y  D + +YW +         D  KT E  + + F ++E  TT     Y      +  +   F L+R   +++L+ + P++L+V L+W SFW+   + PARV L +T+ L  ++I+    +++  +  +  + ++L+ +  F+ ++++E     +L  V+   E+K + +L     +P  R  + +   ++ + N+      +N      +    T  +ER S  R  +++         +++D+ +R I P  Y ++
Sbjct:   97 IPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLS--MTFDGRLVKKIWVPDMFFVHSKR----SFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKG-------NDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGW-YNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKEQKLREKLPCTSGLPPPRTAMLDGNYSDGEVNDLDNYMPENGEKPDRMMVQLTLASERSSPQRKSQRSSYVSMRIDTHAIDKYSRIIFPAAYILF 470

The following BLAST results are available for this feature:

BLAST of TCONS_00028072-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00028072-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRR1	1.358e-34	25.77	Gamma-aminobutyric acid receptor subunit rho-1 OS=...	[more]

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TCONS_00028072-protein (polypeptide) - C. hemisphaerica