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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028072 ID=TCONS_00028072|Name=TCONS_00028072|organism=Clytia hemisphaerica|type=transcript|length=1690bp
AACTTTTATTATCACGAACAGGCAAAGGAAAACAGGAGCCTTTTGGTTCT
TGAGGCAACAAAATGGAGATgttaaaaatcttattttgtttaACACTATG
TTGTTTTGGAGTCATTGCTGGTGAAGTTATGGCAAGCTTGAAAAACATTA
ATATGACAAATTATGAGAAAGTGTCATTGCCATATATAGCTGAACAAAAC
AAGACAGTCGATGTTAACGTATCGATGTACATTCTAAATATTGGTAATTT
GAATACACAAGAAATGACTTTCGAAGTTGAAATGTATTTTGGCATGAAAT
GGAAAGATCCAAGATTGGCTTTCAAAGAATACAACAATGCTTCGTACGCT
CTTGTAACAGGGGAGACTGCATACGACAATATTTGGGTCCCAGACCTTTT
TATTCGAAACATGAAACACGTCGAGAGCAGTACCTTTCTTAAAGATTTGT
CAGGAGTAATGATCTACCCTGACGGTATTGTGTCATTGTCAAGTCGGATA
AGGGTCGTTGCACACTGTGAAATGGATCTACTGATGTTTCCATTGGATTC
TCAGAGCTGTAACTTAATGATAGAATCGTACCTCTATCATACCGATGTCA
TGAAAATGTATTGGGCCGAAAACCCAGTTGTGATTGACGATAGAAGAGAC
GGGAGAAAAACTGAAATCGATACGTGGAACGGTTTTACTCTAGAGGAAGT
TAAAACCACTGAAGATAGCTATATATACCCGATCAATAAGTTAGAGTTTA
AAAACATGATAGCAACTTTTGTATTAAAGAGAGAACCACAGTATTACATT
CTCAGAGGTTTCATCCCAAGCTCATTGTTGGTCTGCCTAACATGGGCAAG
TTTTTGGTTACCCACATCCAGCTATCCAGCCAGGGTAGCACTTATAGTGA
CGTCATTCTTGGCGTCAATTGTATTATATCAAGGTTCTACATTACACTCT
ATTCAGATGACAGTGATGCAAGTGTTTTTGTTTGGCAATATTTCCTTCAT
TATGGTCACTTTGATGGAGTTCCTGATGGCCGTCAAAGCAGATCACGAGA
AGAAAGAGAAAACAGAGcttGTACCTACGATCcggaatgaaattttcaac
agcGCAAACGAAACGCAAGAAAATGAATTCTGGCCAAAGGAGAAGAAAAA
CATGACAAGTGCAGTCGACGTaggtaaaaatcaaaccaatgaaaatgaaa
ggaaATCAACGACACGCAATAAAGAAAAGACGGAAAATTCGGTTGATCGG
AAAGCCCGGTTTATCATCCCaattctttatttcatttatgtTGGAGTATT
TGTTGCagctttatttttcttaaatcaagaataaaaatgtcctattTTGA
TATCACGCAGAGAAGTCGTGGAAAGAGATTGGAAATTGCTCTTAACTTAA
AATTTCATGTCTTTCAAAACGAAGGCAAGGATCGGCGAACAGCAGTAGCT
TGACAAGAGGAAGATTAAATCCGAGCAAAGAATACTTTACAGCTAAACAA
ACGATTCACATTAAAATCTGGTGATTGCTAgacaaacatgaaattttgag
tATAAAGATGCTAGTAATGTGTAATTGGGCAATTGAGCACTTTATTTATC
CTAATTCGTTATTTAATGTCGtagttaacaattttgtaatatgATAATAT
AATCATTTTCATGCattttcaaatatcaaataaatCTTAC Run BLAST on NCBI protein sequence of TCONS_00028072-protein >TCONS_00028072-protein ID=TCONS_00028072-protein|Name=TCONS_00028072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MEMLKILFCLTLCCFGVIAGEVMASLKNINMTNYEKVSLPYIAEQNKTVD
VNVSMYILNIGNLNTQEMTFEVEMYFGMKWKDPRLAFKEYNNASYALVTG
ETAYDNIWVPDLFIRNMKHVESSTFLKDLSGVMIYPDGIVSLSSRIRVVA
HCEMDLLMFPLDSQSCNLMIESYLYHTDVMKMYWAENPVVIDDRRDGRKT
EIDTWNGFTLEEVKTTEDSYIYPINKLEFKNMIATFVLKREPQYYILRGF
IPSSLLVCLTWASFWLPTSSYPARVALIVTSFLASIVLYQGSTLHSIQMT
VMQVFLFGNISFIMVTLMEFLMAVKADHEKKEKTELVPTIRNEIFNSANE
TQENEFWPKEKKNMTSAVDVGKNQTNENERKSTTRNKEKTENSVDRKARF
IIPILYFIYVGVFVAALFFLNQE Run BLAST on NCBI transcript from alignment at sc0000662:91329..99832+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028072 ID=TCONS_00028072|Name=TCONS_00028072|organism=Clytia hemisphaerica|type=transcript|length=8504bp|location=Sequence derived from alignment at sc0000662:91329..99832+ (Clytia hemisphaerica)
AACTTTTATTATCACGAACAGGCAAAGGAAAACAGGAGCCTTTTGGTTCT
TGAGGCAACAAAATGGAGATgttaaaaatcttattttgtttaACACTATG
TTGTTTTGGAGTCATTGCTGGTGAAGTTATGGCAAGCTTGAAAAACATTA
ATATGACAAATTATGAGAAAGTGTCATTGCCATATATAGCTGAACAAAAC
AAGACAGTCGATGTTAACGTATCGATGTACATTCTAAATATTGGTAATTT
GAATACACAAGAAATGACTTTCGAAGTTGAAATGTATTTTGGCATGAAAT
GGAAAGATCCAAGATTGGCTTTCAAAGAATACAACAATGCTTCGTACGCT
CTTGTAACAGGTTAGAAAATTAATATTTATATgatttagaaataatttga
aatatgtaCATATAATCCCTTAATAATTATAGCCAACGTATTTTAACCAA
CCCTCCTTTGAACGATCAATCTTTTAGAGTCCATAATATTAAACTACCTT
AAGAAATCCGTATCTTAGACATATAAACTCTACAAGAACATCAttaatgt
gaaaaaagttttcaaaaaaatttatttcatcaaAAGAGATGAAAGTCTAA
AGTTTATCAATGATTGacttaaaaaatcataaaaaacaacaaaaaagagc
ccttttttAAGTCAACCAGGGCAAAGCTTTAAACTATATTTTTTGATCGA
ATGAAACGTTTTTAAATCTTACgacgttctaagattgaagagtttatctt
cgtttttccatgttttaaattttctcttttttcataatattccactccaa
attatctttttaacgagcacgaAACCGgtaactaattcaaattctataaa
agttattgaggtttgaaaatcACTGCatgctaatttgaaatagacttcaG
AGTTGAAACCCTATTCTCCCTTCATTTTAGGGGAGACTGCATACGACAAT
ATTTGGGTCCCAGACCTTTTTATTCGAAACATGAAACACGTCGAGAGCAG
TACCTTTCTTAAAGATTTGTCAGGAGTAATGATCTACCCTGACGGTATTG
TGTCATTGTCAAGTCGGATAAGGGTCGTTGCACACTGTGAAATGGATCTA
CTGATGTTTCCATTGGATTCTCAGAGCTGTAACTTAATGATAGAATCGTA
CCTCTATCATACCGATGTCATGAAAATGTATTGGGCCGAAAACCCAGTTG
TGATTGACGATAGAAGAGACGGGAGAAAAACTGAAATCGATACGTGGAAC
GGTTTTACTCTAGAGGAAGTTAAAACCACTGAAGATAGCTATATATACCC
GATCAATAAGTTAGAGTTTAAAAACATGATAGCAACTTTTGTATTAAAGA
GAGAACCACAGTATTACATTCTCAGAGGTTTCATCCCAAGTTCACTACTG
GTCTGTCTGACGTGGGCAAGCTTTTGGCTACCAACATCCAGTTTCCCAGC
AAGGATCACCTTGGTCGTGACATCATTTCTAGCATCTATCGTATTATATC
AAGGCTCAACCCTACACGCTCATCAGATGACAGTCATGCAAGTGTTTTTG
TTTGGGAATATTGCATTCATCTTACTGACACTGTTGGAGTTTCTGTTGGC
AGTAACGGCTGataagaaaagagaaaaagagttGGAACAGGTAAGTACTT
TATACTCTCCAAATACAAACTTGATATCAGAAGTGTGAATCAGCGAAAAT
CACCTTCACACCACAAAAAGAAAACCCTAATATGGCCCACTCATCTTCCA
GTCAAAAGTTGGGACGAgagatgaagtttttacaagctctttatttgatt
tgatttgatttggttggtcgttaaccagtaataaaacaattttgttactt
tttctaaagatcGCCTCATTTTTAACTACAAATGATCAGTTATTAAAGTC
TTATAAAAACTTTCTCTCATCTTCCATTTTTTTCCCCTATTCATCGATCA
TAAATTTCTTAAATGAAAAGGTTCAGCATTCTcgaatttgattaaatttt
aaaCATCCACTTATTTTTCCAGGTCAATGCATTTATCAACGATTTGTTGA
NGATTAAATTTTAAATATCCACTTATTTTTCCAGGTCAATGCATTTATCA
ACGATTTGTTGAAGAGCGAGGATATTCAAatcaaagaaagagaagaaaac
aCCACAATATATACCAACAACAACATTAACAacaattcaaaagaaaacga
AACTTCAGTTGATTTAAGGACAGCCATGAAAGAGAAATCAATGCTGGATG
CTGACAATGAACAAAAAGTGAATCGAGTAGACCACAAAGCCAGATTCTTG
GTCCCTTTTGTTTATTGTAtttatgttgttgtttttgttgccGTCATTCT
TCAACACCGATGAAAAATAAAGGCGAAATGAAGATAGGAGTGAAAGGAGT
TGTTTAAATTGAGAGGTTGCACAAGTTGGACACGAAAATATAATACTTGT
ATGTTGTTCCAGAAAGAACTCAAATAAACTTTGTATCAGCAAAACGACGA
TGtcaaaatacacttttttatgagaacacgAGGCGGAAAATTAGCCAAAA
CTTacgaacaaattaagaacaatccgaGCATCGCATTTCAGAAAGTACTA
ATTTTAACAGACTTTAAACCCATTTGaagtttttaagtaaagaaactata
AAGCGAGTTAAGAAaattgtaagaacattttaagagtgaaaatttcaaaa
gattaagaacTAAGGCTAAGGttgagcaaaaatttactggttcttataaa
aaaagcgtgtatttgaaactttaaaaaaatggaatgGCAAAAAGTAAGTG
TTTGGCGAGTACTTGCCCAAATTACGTTGTCAAATGACTCAAAATAAGAT
GGCAGCAGAGTATTAACAAAAATTTGGCCTTAAAAAAAAGGGGGTGTCAC
CATCCTGCTACATAGCTTAAATTacattcaaataaaatgaatgatttaaa
aaaatgattgcaacatttttaatatagcctagttaactaagcccacACGG
CTATAATGGCAATATAAcattttcggcgctttaaagatttttttatattt
acagattttaagtttgccttggaatactgttattcagtcacaacttacca
tcagatttatcctggtgactgaatcaaactagcttagatttctaggctat
ttttaatattcaatttttagttttgtcgATTCAGGTTGATCTAGATTTTA
aaacctttttagaatttaatagGAACTGTATGTTACGGAAAATGATTTAT
CAATAAATGATTCATAAAATTCCCATGGAAAAATTTCAATGGCCATTCAA
TCAATATAAAGTTATTCGCGAAAGAATTAAATTTGAAGTTATAAAAAAAC
TGGTTATCAAGCGGTTGCATTCCATACTTAAATTACGAAATACATACAAT
TCTTCACAAGTCAGATTTAAGATCTCAAGATGTCTCTAATCCCCTTGGGA
AAATTAAACCCTTGATTTTTCCATACCGTCCCTGGCCGTTTTCTTTCCGT
TCGTATCACTGcgagaaagggggggggggggggggaaaatttgaggttta
aaaaaaattttccccttttttttttcccccccccccgggcctttTTTTTT
CCGTTTGTTACCCTggggaaaaaggggggggggggggtgttaaTATATCG
cttataatgaaattttgccccTTTATCTGTTTGTTTCATATCATTCATGA
AAAATAAGTTTATCAGATTTATGACATCTTGACTAGATGTTATGGTAAAG
TTTGCAGCATCTGTTATAGTTTCACATTATTTGTTTAGTTAACTTTTAAT
TCATGCCGAGACTATAATAACTATAAAGTCCCAATGATAAAAATGATTAA
TATATATGTGGAACTCAGAGGGAGAAACTACTGTAGCATTCGaagatata
cacgttttttttatgtataagaacaaagtatataagaacataaggcttcg
aagaCATAAAATTActaacatttttaggctttgcagactctaaaactaaa
aaaaaaaataatctaaaaatgAGATCACTTTTAAGCTAAAACctaaaagg
ttaagaacatccgaagcaTTCAAAAGTTTCGGACgttattacaaaaaaaa
gcgtgtaagaaGGGTCTAAGTTTAAAAACTGTATAGATTTCTGGGGCAAT
TGttcataaagaagaaaaaaaaagcaataaagaaagtgaaaaagtaAACA
TATacaaaatttgaataatttgattTGAAGAATGAAGAAACACTGTAAAT
TAATGAGATgacttagaaaaaaatcaagtcAAATCAATAGCTTAATAATA
TCAATTATTcacaatttttctcaatttaatcAAATTGGATATGAAGCAAG
CAGCTAAAACAAAATTGACCTATACAAAATCATATAATGTAAATTGTAAA
GATATGTAAAACAGTCTTAAGATTTCGTTTTTACAAAACTCAAGATGGAG
GTTATGAAGGTTTCACTTCTTTTCGTGTTGTTGATACAATTATGCGATGG
ACAAAACATAGCAAATATTGAAGACATAAGCCTGGCAAACTATAGTAAAG
TTGCCACACCTTATTTATCTAACCCTAATAAAACAGTTGATGTTTACATA
TCGATGTTCATATTGAACATTGGTAATCTGAACACAAAGGAGATGACTTT
TGAGACTGAAAtgtattttgaaatgaaatggaAAGATCCAAGATTGGCAT
TCCAAGATTATCACAATGCTACTTATGCTCTTGTGTCAGGTACAACAAAG
TTTTAAATTATACTCTTTTCAATATAATGCTGATATCAGCACTCAAGGAT
TGGGCAGTTCCATTTAAAATTAATACATAGGGGTGGACCAAACTTTTCAA
GCAAAatagtaatttttgaaaatgtgtggatcCCCCTGGATACCCCCTTA
CAAATTTGCAAAAAACCAATAGTATTCTTCATACCCTAAAGTTACGAACT
AAATTCAATCTTTTACActctggaaattttagaatactTTTTTACACCct
ggaaaataaaacaaaatttctaaggCCCtctatggatataaaatggaatg
gccatTTTACGTGCTTtaatatttttcgtgttttaaaaggatttttttga
aaatgatgtccAGTCAATTGCCCCCTAGGCAAATTGCACCTCCCCAAATT
AACAACAAAATAGGCAAACAATGACATTCAAAAGTGTAAGTAAAATTCGG
TCTGAAAAACATCGTATCACTTTACACTGACGCTAAACCCGAAATCACTC
TGTTCATAAATCcatttacagaatttcaaatccAAATCTTAATCCAAACA
CTAATTCCCTCTTAAAGGGTCCCATCAAAACCAAAAACCAAATCTCTCTT
CAAATCAAAAGTGTTTCTTCTAATTACACAGGAGAGACAGCTTACGAGAA
AATCTGGGTCCCAGACCTCTTCGTTCGTAACATGAAGCAAGTTGAAAACA
GCAAATTTCTGACTGACCTTTCCGGCGTAACAATCAACCCAGATGGTTTG
GTCGAGCTGTCGAGTAGNACATGAAGGAGGTTGAAAACAGCAAATTTCTG
ACTGACCTTTCCGGCGTAACAATCAACCCAGATGGTTTGGTCGAGCTGTC
GAGTAGAATCAGAGTGGTGGCACATTGTGAAATGGATCTATTTATGTTCC
CGTTTGACTCTCAATCGTGTAATATCATGATCACTTCCTATCTTTACAAT
ACGGCTGTCTTGTCAATGTATTGGAGTGAAAACCCAGTGGTGATTGATGA
GAAGCGAGATGGCCGAGAAACAAAGATTGAAGGTTTCATGGGATTCCAAC
TGACACGGTCATTGACAAGAGAAGATAGCTATCTGTATCCATTGAGTGGA
TTGAGATATCAATACATGATTGCAACTTTTGTGTTAAAGAGAGAACCACA
GTACTACATTCTCAGAGGTTTCATCCCAAGCTCATTGTTGGTCTGCCTAA
CATGGGCAAGTTTTTGGTTACCCACATCCAGCTATCCAGCCAGGGTAGCA
CTTATAGTGACGTCATTCTTGGCGTCAATTGTATTATATCAAGGTTCTAC
ATTACACTCTATTCAGATGACAGTGATGCAAGTGTTTTTGTTTGGCAATA
TTTCCTTCATTATGGTCACTTTGATGGAGTTCCTGATGGCCGTCAAAGCA
GATCACGAGAAGAAAGAGAAAACAGAGGTAACGTTTAGTAGAAAGTTACC
TTGGAGACATTCTTATTCTTGATATGTGTAAgttaagattacgtcatttt
cccTATCAGAAACACCCGAAAACACATTAGCAACACAGGGGTCAAAgttt
ttttcgggtgtttccgatccgaaaaatgacgtaatcttgacttgcgcata
tcaagaatttcaAAGGTTGTTTTTTACCCCAATTCTTCGACCTCGAAACT
GGCTTCCTTTTTCACATAATCTGCCCCCTTCCCAATATGAAGATACCGAG
GGTAAGATTTATagagaagatgaaaatgaaccTCAAAATGAAATGCCCTT
ACGAATTATATACAAGTAGATGAAGTCATAATACTGACAGAAGAtagaaa
taaatagaaagttgaATAATAATATTTTCTGATTGTTTTCTTTTCCTTAA
ACTTTCATCATAgtcattttataaaaacactggtctagaaggcttttgtc
tcgttttattgttaaaagatggatagtaaggtcgtttagcataatttaca
ggaaaaaaataatatatagctgaaactttctccagaccttctctatagga
tacttatgcctcaggaaaaaaatcCCCTagaatcccactggtggaacatt
ccctttttgggcaatttctttttcccccaggcaaaaccctaagggcgaaa
tgttttgaaaatttcaaactcattttcagacaatatCAGGTATACCATTC
GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNctgaggcataagcatcctatagagaaggtctggaga
aagtttcagctatatattatttttttcctacaaacagcctgtacttttgt
aacacgaccacactaggAGCTttcgtaccaaaatcgatttattttgcaaa
cttttttgatcatgtgatcagaaaatagaccaatcccaagaggataTTTT
GGTAACgcgatcaaaaagtatgcaaatcgcaacttgccttttgtttgtaa
caaaagaaaatttaactaaaaagctAAAtaaatacattgccagaccgggg
ttttttataatgactattttttcattttcagcttGTACCTACGATCcgga
atgaaattttcaacagcGCAAACGAAACGCAAGAAAATGAATTCTGGCCA
AAGGAGAAGAAAAACATGACAAGTGCAGTCGACGTaggtaaaaatcaaac
caatgaaaatgaaaggaaATCAACGACACGCAATAAAGAAAAGACGGAAA
ATTCGGTTGATCGGAAAGCCCGGTTTATCATCCCaattctttatttcatt
tatgtTGGAGTATTTGTTGCagctttatttttcttaaatcaagaataaaa
atgtcctattTTGATATCACGCAGAGAAGTCGTGGAAAGAGATTGGAAAT
TGCTCTTAACTTAAAATTTCATGTCTTTCAAAACGAAGGCAAGGATCGGC
GAACAGCAGTAGCTTGACAAGAGGAAGATTAAATCCGAGCAAAGAATACT
TTACAGCTAAACAAACGATTCACATTAAAATCTGGTGATTGCTAgacaaa
catgaaattttgagtATAAAGATGCTAGTAATGTGTAATTGGGCAATTGA
GCACTTTATTTATCCTAATTCGTTATTTAATGTCGtagttaacaattttg
taatatgATAATATAATCATTTTCATGCattttcaaatatcaaataaatC
TTAC Coding sequence (CDS) from alignment at sc0000662:91329..99832+ >TCONS_00028072 ID=TCONS_00028072|Name=TCONS_00028072|organism=Clytia hemisphaerica|type=CDS|length=5088bp|location=Sequence derived from alignment at sc0000662:91329..99832+ (Clytia hemisphaerica)
ATGGAGATgttaaaaatcttattttgtttaACACTATGTTGTTTTGGAGT
CATTGCTGGTGAAGTTATGGCAAGCTTGAAAAACATTAATATGACAAATT
ATGAGAAAGTGTCATTGCCATATATAGCTGAACAAAACAAGACAGTCGAT
GTTAACGTATCGATGTACATTCTAAATATTGGTAATTTGAATACACAAGA
AATGACTTTCGAAGTTGAAATGTATTTTGGCATGAAATGGAAAGATCCAA
GATTGGCTTTCAAAGAATACAACAATGCTTCGTACGCTCTTGTAACAGGG
GAGACTGCATACGACAATATTTGGGTCCCAGACCTTTTTATTCGAAACAT
GAAACACGTCGAGAGCAGTACCTTTCTTAAAGATTTGTCAGGAGTAATGA
TCTACCCTGACGGTATTGTGTCATTGTCAAGTCGGATAAGGGTCGTTGCA
CACTGTGAAATGGATCTACTGATGTTTCCATTGGATTCTCAGAGCTGTAA
CTTAATGATAGAATCGTACCTCTATCATACCGATGTCATGAAAATGTATT
GGGCCGAAAACCCAGTTGTGATTGACGATAGAAGAGACGGGAGAAAAACT
GAAATCGATACGTGGAACGGTTTTACTCTAGAGGAAGTTAAAACCACTGA
AGATAGCTATATATACCCGATCAATAAGTTAGAGTTTAAAAACATGATAG
CAACTTTTGTATTAAAGAGAGAACCACAGTATTACATTCTCAGAGGTTTC
ATCCCAAGCTCATTGTTGGTCTGCCTAACATGGGCAAGTTTTTGGTTACC
CACATCCAGCTATCCAGCCAGGGTAGCACTTATAGTGACGTCATTCTTGG
CGTCAATTGTATTATATCAAGGTTCTACATTACACTCTATTCAGATGACA
GTGATGCAAGTGTTTTTGTTTGGCAATATTTCCTTCATTATGGTCACTTT
GATGGAGTTCCTGATGGCCGTCAAAGCAGATCACGAGAAGAAAGAGAAAA
CAGAGcttGTACCTACGATCcggaatgaaattttcaacagcGCAAACGAA
ACGCAAGAAAATGAATTCTGGCCAAAGGAGAAGAAAAACATGACAAGTGC
AGTCGACGTaggtaaaaatcaaaccaatgaaaatgaaaggaaATCAACGA
CACGCAATAAAGAAAAGACGGAAAATTCGGTTGATCGGAAAGCCCGGTTT
ATCATCCCaattctttatttcatttatgtTGGAGTATTTGTTGCagcttt
atttttcttaaatcaagaataaATGGAGATgttaaaaatcttattttgtt
taACACTATGTTGTTTTGGAGTCATTGCTGGTGAAGTTATGGCAAGCTTG
AAAAACATTAATATGACAAATTATGAGAAAGTGTCATTGCCATATATAGC
TGAACAAAACAAGACAGTCGATGTTAACGTATCGATGTACATTCTAAATA
TTGGTAATTTGAATACACAAGAAATGACTTTCGAAGTTGAAATGTATTTT
GGCATGAAATGGAAAGATCCAAGATTGGCTTTCAAAGAATACAACAATGC
TTCGTACGCTCTTGTAACAGGGGAGACTGCATACGACAATATTTGGGTCC
CAGACCTTTTTATTCGAAACATGAAACACGTCGAGAGCAGTACCTTTCTT
AAAGATTTGTCAGGAGTAATGATCTACCCTGACGGTATTGTGTCATTGTC
AAGTCGGATAAGGGTCGTTGCACACTGTGAAATGGATCTACTGATGTTTC
CATTGGATTCTCAGAGCTGTAACTTAATGATAGAATCGTACCTCTATCAT
ACCGATGTCATGAAAATGTATTGGGCCGAAAACCCAGTTGTGATTGACGA
TAGAAGAGACGGGAGAAAAACTGAAATCGATACGTGGAACGGTTTTACTC
TAGAGGAAGTTAAAACCACTGAAGATAGCTATATATACCCGATCAATAAG
TTAGAGTTTAAAAACATGATAGCAACTTTTGTATTAAAGAGAGAACCACA
GTATTACATTCTCAGAGGTTTCATCCCAAGCTCATTGTTGGTCTGCCTAA
CATGGGCAAGTTTTTGGTTACCCACATCCAGCTATCCAGCCAGGGTAGCA
CTTATAGTGACGTCATTCTTGGCGTCAATTGTATTATATCAAGGTTCTAC
ATTACACTCTATTCAGATGACAGTGATGCAAGTGTTTTTGTTTGGCAATA
TTTCCTTCATTATGGTCACTTTGATGGAGTTCCTGATGGCCGTCAAAGCA
GATCACGAGAAGAAAGAGAAAACAGAGcttGTACCTACGATCcggaatga
aattttcaacagcGCAAACGAAACGCAAGAAAATGAATTCTGGCCAAAGG
AGAAGAAAAACATGACAAGTGCAGTCGACGTaggtaaaaatcaaaccaat
gaaaatgaaaggaaATCAACGACACGCAATAAAGAAAAGACGGAAAATTC
GGTTGATCGGAAAGCCCGGTTTATCATCCCaattctttatttcatttatg
tTGGAGTATTTGTTGCagctttatttttcttaaatcaagaataaATGGAG
ATgttaaaaatcttattttgtttaACACTATGTTGTTTTGGAGTCATTGC
TGGTGAAGTTATGGCAAGCTTGAAAAACATTAATATGACAAATTATGAGA
AAGTGTCATTGCCATATATAGCTGAACAAAACAAGACAGTCGATGTTAAC
GTATCGATGTACATTCTAAATATTGGTAATTTGAATACACAAGAAATGAC
TTTCGAAGTTGAAATGTATTTTGGCATGAAATGGAAAGATCCAAGATTGG
CTTTCAAAGAATACAACAATGCTTCGTACGCTCTTGTAACAGGGGAGACT
GCATACGACAATATTTGGGTCCCAGACCTTTTTATTCGAAACATGAAACA
CGTCGAGAGCAGTACCTTTCTTAAAGATTTGTCAGGAGTAATGATCTACC
CTGACGGTATTGTGTCATTGTCAAGTCGGATAAGGGTCGTTGCACACTGT
GAAATGGATCTACTGATGTTTCCATTGGATTCTCAGAGCTGTAACTTAAT
GATAGAATCGTACCTCTATCATACCGATGTCATGAAAATGTATTGGGCCG
AAAACCCAGTTGTGATTGACGATAGAAGAGACGGGAGAAAAACTGAAATC
GATACGTGGAACGGTTTTACTCTAGAGGAAGTTAAAACCACTGAAGATAG
CTATATATACCCGATCAATAAGTTAGAGTTTAAAAACATGATAGCAACTT
TTGTATTAAAGAGAGAACCACAGTATTACATTCTCAGAGGTTTCATCCCA
AGCTCATTGTTGGTCTGCCTAACATGGGCAAGTTTTTGGTTACCCACATC
CAGCTATCCAGCCAGGGTAGCACTTATAGTGACGTCATTCTTGGCGTCAA
TTGTATTATATCAAGGTTCTACATTACACTCTATTCAGATGACAGTGATG
CAAGTGTTTTTGTTTGGCAATATTTCCTTCATTATGGTCACTTTGATGGA
GTTCCTGATGGCCGTCAAAGCAGATCACGAGAAGAAAGAGAAAACAGAGc
ttGTACCTACGATCcggaatgaaattttcaacagcGCAAACGAAACGCAA
GAAAATGAATTCTGGCCAAAGGAGAAGAAAAACATGACAAGTGCAGTCGA
CGTaggtaaaaatcaaaccaatgaaaatgaaaggaaATCAACGACACGCA
ATAAAGAAAAGACGGAAAATTCGGTTGATCGGAAAGCCCGGTTTATCATC
CCaattctttatttcatttatgtTGGAGTATTTGTTGCagctttattttt
cttaaatcaagaataaATGGAGATgttaaaaatcttattttgtttaACAC
TATGTTGTTTTGGAGTCATTGCTGGTGAAGTTATGGCAAGCTTGAAAAAC
ATTAATATGACAAATTATGAGAAAGTGTCATTGCCATATATAGCTGAACA
AAACAAGACAGTCGATGTTAACGTATCGATGTACATTCTAAATATTGGTA
ATTTGAATACACAAGAAATGACTTTCGAAGTTGAAATGTATTTTGGCATG
AAATGGAAAGATCCAAGATTGGCTTTCAAAGAATACAACAATGCTTCGTA
CGCTCTTGTAACAGGGGAGACTGCATACGACAATATTTGGGTCCCAGACC
TTTTTATTCGAAACATGAAACACGTCGAGAGCAGTACCTTTCTTAAAGAT
TTGTCAGGAGTAATGATCTACCCTGACGGTATTGTGTCATTGTCAAGTCG
GATAAGGGTCGTTGCACACTGTGAAATGGATCTACTGATGTTTCCATTGG
ATTCTCAGAGCTGTAACTTAATGATAGAATCGTACCTCTATCATACCGAT
GTCATGAAAATGTATTGGGCCGAAAACCCAGTTGTGATTGACGATAGAAG
AGACGGGAGAAAAACTGAAATCGATACGTGGAACGGTTTTACTCTAGAGG
AAGTTAAAACCACTGAAGATAGCTATATATACCCGATCAATAAGTTAGAG
TTTAAAAACATGATAGCAACTTTTGTATTAAAGAGAGAACCACAGTATTA
CATTCTCAGAGGTTTCATCCCAAGCTCATTGTTGGTCTGCCTAACATGGG
CAAGTTTTTGGTTACCCACATCCAGCTATCCAGCCAGGGTAGCACTTATA
GTGACGTCATTCTTGGCGTCAATTGTATTATATCAAGGTTCTACATTACA
CTCTATTCAGATGACAGTGATGCAAGTGTTTTTGTTTGGCAATATTTCCT
TCATTATGGTCACTTTGATGGAGTTCCTGATGGCCGTCAAAGCAGATCAC
GAGAAGAAAGAGAAAACAGAGcttGTACCTACGATCcggaatgaaatttt
caacagcGCAAACGAAACGCAAGAAAATGAATTCTGGCCAAAGGAGAAGA
AAAACATGACAAGTGCAGTCGACGTaggtaaaaatcaaaccaatgaaaat
gaaaggaaATCAACGACACGCAATAAAGAAAAGACGGAAAATTCGGTTGA
TCGGAAAGCCCGGTTTATCATCCCaattctttatttcatttatgtTGGAG
TATTTGTTGCagctttatttttcttaaatcaagaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028072-exon-sc0000662-1491911889:91329..91688 | TCONS_00028072-exon-sc0000662-1491911889:91329..91688 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1510915933:91329..91688 | TCONS_00028072-exon-sc0000662-1510915933:91329..91688 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1575043694:91329..91688 | TCONS_00028072-exon-sc0000662-1575043694:91329..91688 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1491911889:92259..92695 | TCONS_00028072-exon-sc0000662-1491911889:92259..92695 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1510915933:92259..92695 | TCONS_00028072-exon-sc0000662-1510915933:92259..92695 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1575043694:92259..92695 | TCONS_00028072-exon-sc0000662-1575043694:92259..92695 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1491911889:97236..97505 | TCONS_00028072-exon-sc0000662-1491911889:97236..97505 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1510915933:97236..97505 | TCONS_00028072-exon-sc0000662-1510915933:97236..97505 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1575043694:97236..97505 | TCONS_00028072-exon-sc0000662-1575043694:97236..97505 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1491911889:99210..99832 | TCONS_00028072-exon-sc0000662-1491911889:99210..99832 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1510915933:99210..99832 | TCONS_00028072-exon-sc0000662-1510915933:99210..99832 | Clytia hemisphaerica | exon |
| TCONS_00028072-exon-sc0000662-1575043694:99210..99832 | TCONS_00028072-exon-sc0000662-1575043694:99210..99832 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000662 | supercontig | sc0000662:91329..99832 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005216 | ion channel activity |
| GO:0005230 | extracellular ligand-gated ion channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005230 |
extracellular ligand-gated ion channel activity |
| molecular_function |
GO:0005216 |
ion channel activity |
Blast
BLAST of TCONS_00028072 vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 6.706e-34 Identity = 100/388 (25.77%), Postives = 190/388 (48.97%), Query Frame = 3
Query: 207 VDVNVSMYILNIGNLNTQEMTFEVEMYFGMKWKDPRLAFKEYNNASYALVTGETAYDNIWVPDLFIRNMKHVESSTFLKDLSG----VMIYPDGIVSLSSRIRVVAHCEMDLLMFPLDSQSCNLMIESYLYHTDVMKMYWAENPVVIDDRRDGRKT-EIDTWNGFTLEEVKTTEDSYIYPINKLEFKNMIATFVLKREPQYYILRGFIPSSLLVCLTWASFWLPTSSYPARVALIVTSFL--ASIVLYQGSTLHSIQ-MTVMQVFLFGNISFIMVTLME-----FLMAVKADHEKKEKTEL-----VPTIRNEIFNS-ANETQENEFWPKEKKNMTSAVDVGKNQTNENERKSTTRNKEKTE--------NSVDRKARFIIPILYFIY 1289
+ V V + + ++ +++ +M F + +Y WKD RL+F NN S + IWVPD+F + K +F+ D + + + PDG V S R+ V A C MD FPLD+Q+C+L IESY Y D + +YW + D KT E + + F ++E TT Y + + F L+R +++L+ + P++L+V L+W SFW+ + PARV L +T+ L ++I+ +++ + + + ++L+ + F+ ++++E +L V+ E+K + +L +P R + + ++ + N+ +N + T +ER S R +++ +++D+ +R I P Y ++
Sbjct: 97 IPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLS--MTFDGRLVKKIWVPDMFFVHSKR----SFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKG-------NDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGW-YNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKEQKLREKLPCTSGLPPPRTAMLDGNYSDGEVNDLDNYMPENGEKPDRMMVQLTLASERSSPQRKSQRSSYVSMRIDTHAIDKYSRIIFPAAYILF 470
The following BLAST results are available for this feature:
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