TCONS_00028314-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028314-protein
Unique NameTCONS_00028314-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028314-protein ID=TCONS_00028314-protein|Name=TCONS_00028314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MRREIREAQLAESTKTLSPDPDEIDEFCSQEDLSFNPSASMSMNLKRGSR
KKIIPLSKIVELHKVLHQFSAERKGSYNRNVPENLAKETLMECAANAKTS
EQWNNVYERMREDVIQDLISKEQRRHSIDCSTDDGILLREEYQTGEKHTK
LNLKAHSLDQLPNIGMDLLSSLTWINLSFNDFLTIPPSMLMLKNVIYLNM
RNNPLVTLPDDISNLKKLKCFIVSFCCLQDVNPRLFQLHELEILDLSHNE
LQWLDDECQNLQSLRELSIEGNFIRALPKGFLKLNLTYFQCSSNFLHKAF
WRETCPSLIQTLEEMCVNVLLSNGIEKETSLEGLIRKPLQSLRCDYCNSR
IPLGGLYTIKPVAEIFGAKNMPILFYLCSTTCRKQLLVSTHIPRFDEDGA
ALENFPMD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016040XLOC_016040Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028314TCONS_00028314Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 169..191
e-value: 93.0
score: 5.3
coord: 238..260
e-value: 1.4
score: 18.0
coord: 192..215
e-value: 13.0
score: 12.4
coord: 261..284
e-value: 2.0
score: 17.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 240..343
e-value: 2.9E-9
score: 36.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 120..239
e-value: 9.6E-17
score: 60.1
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 128..348
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 222..272
e-value: 1.3E-7
score: 31.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Blast
[Close]
BLAST of TCONS_00028314-protein vs. Swiss-Prot (Human)
Match: LRC63 (Leucine-rich repeat-containing protein 63 OS=Homo sapiens GN=LRRC63 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.792e-28
Identity = 67/177 (37.85%), Postives = 103/177 (58.19%), Query Frame = 0 
Query:  151 LNLKAHSLDQLPNIGMDLLSSLTWINLSFNDFLTIPPSMLMLKNVIYLNMRNNPLVTLPDDISNLKKLKCFIVSFCCLQDVNPRLFQLHELEILDLSHNELQWLDDECQNLQSLRELSIEGNFIRALPKGFLKLNLTYFQCSSNFLHKAFWRETCPSLIQTLEEMCVNVLLSNGIEK 327
            LNLK   +   P++   L   L ++NLSFND    P  +L LKN+  L +RNNP+  +P +I  L+ L+ F ++F  +  +   LF L  LE LD+S+NEL ++ +E Q L+SL +L+++GN +   P G LKLNLT  Q  +NF H  FWR+   +  Q L ++    ++ N + K
Sbjct:  327 LNLKGFFILNCPDL-TPLAFQLIYLNLSFNDLHYFPTEILCLKNLQILKLRNNPIKEIPSEIQQLEFLRIFTIAFNLITVLPIGLFSLSYLEELDVSYNELTFIPNEIQKLRSLEKLTVDGNELSFFPHGILKLNLTKIQFENNFTHPCFWRDNYLNNPQQLTQIISLFIVQNKLHK 502
The following BLAST results are available for this feature:
BLAST of TCONS_00028314-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC631.792e-2837.85Leucine-rich repeat-containing protein 63 OS=Homo ... [more]
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