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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028314 ID=TCONS_00028314|Name=TCONS_00028314|organism=Clytia hemisphaerica|type=transcript|length=2843bpRun BLAST on NCBI protein sequence of TCONS_00028314-protein >TCONS_00028314-protein ID=TCONS_00028314-protein|Name=TCONS_00028314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp MRREIREAQLAESTKTLSPDPDEIDEFCSQEDLSFNPSASMSMNLKRGSRRun BLAST on NCBI transcript from alignment at sc0000673:93862..155881- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028314 ID=TCONS_00028314|Name=TCONS_00028314|organism=Clytia hemisphaerica|type=transcript|length=62020bp|location=Sequence derived from alignment at sc0000673:93862..155881- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000673:93862..155881- >TCONS_00028314 ID=TCONS_00028314|Name=TCONS_00028314|organism=Clytia hemisphaerica|type=CDS|length=11043bp|location=Sequence derived from alignment at sc0000673:93862..155881- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028314 vs. Swiss-Prot (Human)
Match: LRC63 (Leucine-rich repeat-containing protein 63 OS=Homo sapiens GN=LRRC63 PE=2 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 2.856e-27 Identity = 67/177 (37.85%), Postives = 103/177 (58.19%), Query Frame = 2
Query: 1190 LNLKAHSLDQLPNIGMDLLSSLTWINLSFNDFLTIPPSMLMLKNVIYLNMRNNPLVTLPDDISNLKKLKCFIVSFCCLQDVNPRLFQLHELEILDLSHNELQWLDDECQNLQSLRELSIEGNFIRALPKGFLKLNLTYFQCSSNFLHKAFWRETCPSLIQTLEEMCVNVLLSNGIEK 1720
LNLK + P++ L L ++NLSFND P +L LKN+ L +RNNP+ +P +I L+ L+ F ++F + + LF L LE LD+S+NEL ++ +E Q L+SL +L+++GN + P G LKLNLT Q +NF H FWR+ + Q L ++ ++ N + K
Sbjct: 327 LNLKGFFILNCPDL-TPLAFQLIYLNLSFNDLHYFPTEILCLKNLQILKLRNNPIKEIPSEIQQLEFLRIFTIAFNLITVLPIGLFSLSYLEELDVSYNELTFIPNEIQKLRSLEKLTVDGNELSFFPHGILKLNLTKIQFENNFTHPCFWRDNYLNNPQQLTQIISLFIVQNKLHK 502 The following BLAST results are available for this feature:
BLAST of TCONS_00028314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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