TCONS_00028423-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028423-protein
Unique NameTCONS_00028423-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028423-protein ID=TCONS_00028423-protein|Name=TCONS_00028423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MYTSSTISNSSCGFDPCSEEKSMGGGSSAIAPEEQSNRSCEKRSKKSNTS
SSTCCGCFSMDGHYSEDEEDIEKRTLREEARSWANNFERLLRHNVGQKVF
QEFLQAQFSDENLRFWIEAEKYLNMTEEERMKRAKSLYEDFVSSISPCEV
SLDAYHRNQIEKEMDTAPKNLFKNAQDYIYCLMYRDCFXSKMHKIIYIV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016102XLOC_016102Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028423TCONS_00028423Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016137RGS
IPR024066RGS_subdom1
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016137RGS domainPRINTSPR01301RGSPROTEINcoord: 133..156
score: 30.25
coord: 175..194
score: 30.65
coord: 105..123
score: 39.59
coord: 83..104
score: 42.69
IPR016137RGS domainSMARTSM00315RGS_3coord: 86..199
e-value: 8.4E-23
score: 91.8
IPR016137RGS domainPFAMPF00615RGScoord: 86..189
e-value: 3.2E-23
score: 82.1
IPR016137RGS domainPROSITEPS50132RGScoord: 86..197
score: 26.381
IPR016137RGS domainSUPERFAMILY48097Regulator of G-protein signaling, RGScoord: 77..189
IPR024066RGS, subdomain 1GENE3D1.10.196.10coord: 75..120
e-value: 3.2E-12
score: 46.0
NoneNo IPR availableGENE3D1.10.167.10coord: 121..186
e-value: 9.5E-19
score: 66.9

Blast
[Close]
BLAST of TCONS_00028423-protein vs. Swiss-Prot (Human)
Match: RGS17 (Regulator of G-protein signaling 17 OS=Homo sapiens GN=RGS17 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.514e-23
Identity = 45/124 (36.29%), Postives = 80/124 (64.52%), Query Frame = 0 
Query:   78 EEARSWANNFERLLRHNVGQKVFQEFLQAQFSDENLRFWIEAEKYLNMTEEERMK----RAKSLYEDFVSSISPCEVSLDAYHRNQIEKEMDTAPKNLFKNAQDYIYCLMYRDCFXSKMHKIIY 197
            EE  SW+ NF+++++   G+ +F+EFL+ ++S+ENL FW+  E   ++ +E+  K    +A+ +YED++S +SP EVSLD+  R  I + +     +++++AQ  IY LM+RD F   ++  IY
Sbjct:   76 EEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACE---DLKKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIY 196
The following BLAST results are available for this feature:
BLAST of TCONS_00028423-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGS174.514e-2336.29Regulator of G-protein signaling 17 OS=Homo sapien... [more]
back to top