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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00028548-protein ID=TCONS_00028548-protein|Name=TCONS_00028548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=906bp
MNNLEEPDEAIEGTYGGPYMVEQIIAIYVGKDRKKYYRVKWVDSWEPEDN
LSEACSALIDNFWSSSARDQTGKEVNRTELKAGQKIIKKEIIESRLNNEN
NPDSPTESYIGNNKVVPTLKSDISAHKDEINVQIPSTSGEKIKKLKQELM
SPTATTFPDKSQSVPPDLGKIQHELLSKSKIEAPSKQADKKVNNNESQQI
VKIQTTSTSTQATKDVHQKPQNKSPKRRSIDCQTQTDPVLDDIIEFDDPP
RVLSPVQHHSISIGTDPPTATQRSTNHTEPFSNRQPYSDSDSEKIVNFQD
GRMGNQEGYSSQNLNDELPYLNDELEQTIYQSQPNPPTQRSINDPNFPNQ
QNLNKQSYQSINEPSHPGPPSIDASDEQSMDESDIVDLASEEDELEITFS
LSTPPSKRQCLDKSKQKQLPASTSRLEKRTREKVTMRRRRNSDSERNTST
ANTGNNMPLLHPRSLLSMYPNGQQPTGNQAQNTINNASNSPQQIPNQENL
QAQTTLRRTLIPSNTGVNNNIQSSNTLPGANTNPVAKLTDRTCNLCKHTF
PNLTLARQHMKKMHATPSSTATNQINLQTRPTNNVNNNPTQSPQQRSSTT
VPTKELSCTVCFGLFRNNRDLKSHMLLHTEKNMHQCEVCLKAFRHKSTLA
QHMLIHTQELPFECKTCGQKFRQRGHLITHMGKHTQNSEGSLHCPYCSLI
SKDINEFRNHVRSHEQELPFKCSQCSERFQKRHDLSLHLDAHNEGRPFTC
PICKKSFKTKPYLFGHMQMHKSNDVIQRPQQTNRPMQQSHPQFQQSGHQA
QHPNHQAQHPNHQIQQPTQRINQQLNRNTTSPMLSTHQAQQRSRQHPQQQ
QQSPIINNNNSQQNKLLNPSQRLQQQRKNSLSNPTPPQQTQPKPPTTVSV
KTQSES Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000953 | Chromo/chromo shadow domain | SMART | SM00298 | chromo_7 | coord: 18..67
e-value: 0.005
score: 26.1 |
| IPR000953 | Chromo/chromo shadow domain | PROSITE | PS50013 | CHROMO_2 | coord: 19..74
score: 8.974 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 541..564
e-value: 1.1
score: 18.2
coord: 634..656
e-value: 0.0095
score: 25.1
coord: 662..684
e-value: 0.0018
score: 27.6
coord: 748..770
e-value: 5.9E-5
score: 32.5
coord: 606..628
e-value: 1.0
score: 18.4
coord: 720..742
e-value: 0.15
score: 21.2
coord: 692..714
e-value: 0.075
score: 22.2 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 664..684 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 722..742 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 636..656 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 750..770 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 543..564 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 608..628 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 606..633
score: 9.099 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 634..661
score: 13.214 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 720..747
score: 12.445 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 662..689
score: 12.071 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 748..775
score: 10.45 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 615..671 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 719..770 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 671..729 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 674..702
e-value: 2.0E-7
score: 30.5
coord: 273..552
e-value: 0.33
score: 10.6
coord: 732..758
e-value: 1.5E-13
score: 50.2 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 703..731
e-value: 4.0E-8
score: 32.7 |
| None | No IPR available | GENE3D | 2.20.28.30 | | coord: 759..809
e-value: 4.3E-4
score: 20.0 |
| None | No IPR available | GENE3D | 2.160.10.10 | | coord: 553..598
e-value: 0.11
score: 11.5 |
| None | No IPR available | GENE3D | 2.40.50.40 | | coord: 20..70
e-value: 1.4E-7
score: 30.8 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 641..652
e-value: 3.1E-8
score: 33.0 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 662..684
e-value: 7.5E-4
score: 19.7
coord: 634..656
e-value: 0.0035
score: 17.6
coord: 748..770
e-value: 1.3E-4
score: 22.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 653..673
e-value: 1.1E-14
score: 53.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 179..233 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 331..383 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 397..494 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 832..906 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 245..292 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 579..600 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 779..819 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 511..533 |
| None | No IPR available | CDD | cd00024 | CHROMO | coord: 19..63
e-value: 1.00943E-8
score: 51.8811 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 599..640
e-value: 2.1E-10
score: 40.2 |
| IPR016197 | Chromo domain-like | SUPERFAMILY | 54160 | Chromo domain-like | coord: 18..65 |
Blast
BLAST of TCONS_00028548-protein vs. Swiss-Prot (Human)
Match: MZF1 (Myeloid zinc finger 1 OS=Homo sapiens GN=MZF1 PE=1 SV=3) HSP 1 Score: 123.25 bits (308), Expect = 8.463e-29 Identity = 62/166 (37.35%), Postives = 85/166 (51.20%), Query Frame = 0
Query: 606 LSCTVCFGLFRNNRDLKSHMLLHTEKNMHQCEVCLKAFRHKSTLAQHMLIHTQELPFECKTCGQKFRQRGHLITHMGKHTQNSEGSLHCPYCSLISKDINEFRNHVRSHEQELPFKCSQCSERFQKRHDLSLHLDAHNEGRPFTCPICKKSFKTKPYLFGHMQMHK 771
+C C FR +L H +HT + C C KAFR + TL QH+ +HT E PF C CGQ+F QR L H HT E HC C L ++ H R H E PF C +C + F++ +L+ H H RP+ CP C K+F+ +P L H++ H+
Sbjct: 541 FACAECGQSFRQRSNLTQHRRIHTGERPFACAECGKAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHT--GEKPYHCGECGLGFTQVSRLTEHQRIHTGERPFACPECGQSFRQHANLTQHRRIHTGERPYACPECGKAFRQRPTLTQHLRTHR 704 HSP 2 Score: 95.1301 bits (235), Expect = 5.528e-20 Identity = 64/243 (26.34%), Postives = 91/243 (37.45%), Query Frame = 0
Query: 606 LSCTVCFGLFRNNRDLKSHMLLHTEKNMHQCEVCLKAFRHKSTLAQHMLIHTQELPFECKTCGQKFRQRGHLITHMGKH-------------------------------------------TQNSEGSLHCPYCSLISKDINEFRNHVRSHEQELPFKCSQCSERFQKRHDLSLHLDAHNEGRPFTCPICKKSFKTKPYLFGHMQMHKSNDVIQRPQQTNRPMQQSHPQFQQSGHQAQHPNH 805
C+ C F + L H L HTE+ C C + F + L +H +HT E PF C CGQ FRQR +L+ H H + S C C + H R H E PF C++C + F++R +L+ H H RPF C C K+F+ +P L H+++H P+ R Q+ Q H + P H
Sbjct: 384 FVCSECGRSFSRSSHLLRHQLTHTEERPFVCGDCGQGFVRSARLEEHRRVHTGEQPFRCAECGQSFRQRSNLLQHQRIHGDPPGPGAKPPAPPGAPEPPGPFPCSECRESFARRAVLLEHQAVHTGDKSFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSFRQRSNLTQHRRIHTGERPFACAECGKAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHTGEKPYH 626 HSP 3 Score: 93.2041 bits (230), Expect = 2.051e-19 Identity = 54/163 (33.13%), Postives = 71/163 (43.56%), Query Frame = 0
Query: 608 CTVCFGLFRNNRDLKSHMLLHTEKNMHQCEVCLKAFRHKSTLAQHMLIHTQELPFECKTCGQKFRQRGHLITHMGKHTQNSEGSLHCPYCSLISKDINEFRNHVRSHEQELPFKCSQCSERFQKRHDLSLHLDAHNEGRPFTCPICKKSFKTKPYLFGHMQMH 770
C+ C F L H +HT C C + F +S L QH +H+ E PF C CGQ FRQR +L H HT E C C + H+R H E PF C +C +RF +R L+ H H +P+ C C F L H ++H
Sbjct: 487 CSECRESFARRAVLLEHQAVHTGDKSFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSFRQRSNLTQHRRIHT--GERPFACAECGKAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHTGEKPYHCGECGLGFTQVSRLTEHQRIH 647
The following BLAST results are available for this feature:
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