TCONS_00028548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028548
Unique NameTCONS_00028548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028548 ID=TCONS_00028548|Name=TCONS_00028548|organism=Clytia hemisphaerica|type=transcript|length=3421bp
CGACAGCCTTTGAAGGCTTGATTTATAtatgtaatttatgcaatgATTAA
GCTGCGCGCCTTGTTCGCCAACCATAAAATGCTGACTTTACAGTTAAATG
CCTTGATGCAAATGACCTTACAACCAAAACAACCTGAAGGGAGTGTCCAA
TCAAAACTTTAGTTTTGCTTGCTTTTAGGTATAACAGTTTGCTTTTTGGG
TGTTATTCACTTGTGTGCCATACAGCATTTCAATTAAATTTaccttttta
caaattttagtttttttaaatgaatgaTAAATAAGAGAAATGAATAACCT
TGAAGAACCAGATGAAGCAATTGAAGGGACTTATGGTGGACCTTACATGG
TTGAGCAAATCATAGCCATTTATGTTGGAAAGGACCGCAAAAAATATTAT
CGTGTGAAATGGGTGGACAGTTGGGAACCCGAAGACAACTTATCAGAAGC
TTGTTCTGCACTGATTGATAATTTCTGGTCTAGTTCGGCACGTGATCAAA
CAGGCAAAGAAGTCAATAGAACAGAATTAAAGGCTggtcaaaaaatcatc
aagaaaGAAATCATAGAATCAAGGCTGAACAATGAAAACAACCCTGACTC
GCCAACGGAAAGTTATATCGGTAACAATAAAGTTGTACCTACACTCAAGT
CAGATATCAGTGCACATAAAGATGAAATCAACGTTCAAATACCATCAACT
TCTggtgagaaaatcaaaaaattgaaacaagaaCTCATGTCACCTACTGC
TACTACTTTCCCCGATAAATCCCAAAGTGTACCACCTGATTTAGGCAAAA
TACAACATGAActattatcaaaatcaaaaatagaaGCTCCTTCAAAACAA
GCCGATAAGAAAGTCAACAATAATGAAAGTCAACAAATAGTAAAGATTCA
AACAACGTCTACCTCAACTCAAGCAACAAAAGATGTTCACCAAAAACCAC
AAAATAAATCACCTAAACGTAGATCAATAGATTGTCAAACACAAACTGAC
CCCGTCCTTGATGATATCATTGAATTTGATGATCCTCCACGTGTTTTATC
ACCTGTCCAACACCACTCTATCAGTATTGGTACAGATCCACCAACGGCAA
CACAACGTTCAACAAACCACACTGAACCATTCAGTAATAGACAACCATAT
TCAGATTCAGATTCTGAGAAAATAGTGAATTTCCAAGATGGAAGAATGGG
TAATCAAGAAGGATACAGCTCACAGAATCTTAATGATGAACTTCCTTATC
TTAATGATGAGCTTGAACAAACAATTTACCAATCTCAACCAAATCCCCCG
ACTCAACGATCAATCAATGATCCGAATTTCCCTAACCAACAGAACCTCAA
TAagcaaagttatcaatcaatcaacgaACCAAGCCATCCAGGTCCACCAA
GCATTGATGCGTCTGATGAACAATCAATGGACGAGAGTGATATTGTAGAC
CTAGCCAGCGAAGAAGACGAACTGGAAATCACATTCTCCTTATCAACTCC
ACCAAGTAAACGTCAATGTCTTGATAAGAGTAAACAAAAACAGCTTCCGG
CAAGCACAAGTCGACTGGAGAAAAGAACTCGTGAAAAAGTTACCATGAGA
CGTCGCAGGAATAGTGATAGCGAGAGGAATACAAGTACAGCTAATACTGG
CAATAACATGCCTTTACTTCATCCGAGAAGCTTATTATCAATGTATCCAA
ATGGTCAACAACCAACTGGCAACCAAGCTCAAAATACAATCAACAATGCA
TCTAACTCACCACAACAAATACCCAACCAAGAAAACCTCCAAGCACAAAC
AACACTCAGAAGAACTCTTATTCCCAGCAACACTGGAGTAAACAACAATA
TACAATCCTCGAACACTTTACCTGGTGCTAATACAAACCCAGTTGCTAAA
TTAACTGACAGGACATGTAATCTCTGTAAACACACATTCCCAAATTTAAC
ATTAGCTCGTCAACACATGAAAAAGATGCACGCAACGCCTTCATCGACCG
CCACAAAccaaataaatttacagaccagaccaacaaataatgtaaacaat
aATCCAACCCAATCACCACAGCAACGTTCATCAACAACTGTCCCTACCAA
AGAACTCTCCTGTACCGTTTGCTTTGGTCTTTTCCGTAATAATCGCGACT
TAAAATCACACATGCTGCTTCATACTGAGAAAAACATGCATCAATGTGAA
GTTTGTTTGAAAGCTTTTCGTCACAAGTCCACACTTGCACAACACATGTT
GATCCATACCCAAGAACTACCTTTCGAGTGTAAAACTTGTGGTCAAAAGT
TTCGACAACGAGGTCATTTGATTACACACATGGGCAAACATACACAAAAC
AGTGAAGGATCTCTCCATTGTCCGTATTGTTCACTCATCAGTAAAGACAT
CAATGAATTCCGAAACCATGTTCGCTCACATGAACAAGAATTACCTTTCA
AATGTAGTCAGTGCTCAGAGAGATTCCAAAAACGCCATGATTTATCGTTA
CACTTGGACGCACACAACGAAGGTCGTCCTTTCACATGCCCCATATgcaa
gaaatcttttaaaaccaAACCGTATCTTTTCGGGCACATGCAAATGCATA
AATCGAATGATGTCATTCAAAGACCTCAGCAAACTAATAGACCAATGCAG
CAAAGTCATCCACAATTTCAACAATCTGGACATCAAGCTCAGCATCCTAA
TCACCAAGCTCAGCATCCTAATCACCAGATCCAACAACCAACTCAACGAA
TAAATCAGCAATTAAATAGAAACACAACTTCACCCATGTTATCTACACAT
CAAGCACAACAAAGATCACGGCAACAtcctcaacaacaacaacaaagtcC
GATCATCAACAACAATAATAGTCAACAAAATAAACTGTTGAATCCTTCTC
AAAGATTGCAACAACAGAGAAAAAACAGTTTATCAAACCCAACACCTCCT
CAACAGACACAACCTAAGCCTCCTACTACAGTCTCAGTGAAAACACAATC
TGAAAGTTAAAAGATTCTTTGCATGTATGTATCTAGGGATCTTTGGTTTG
GTTGTATGGTATGTATTTTGCTGAGATTCTTGGCTGGACGTTACCTGATT
TTCTTCTGTATATTCTTTTGAAAtgcatttgtttttatttaatgaTGGCT
TTGTAGGTTTTCATTGGCTGTGTTAGATTGTATTgtatttgtttaaaatt
ttgtttctttattTATTAGCGATGACTACCTTAAATTGGGAAAGTCCCTC
GCCATTTTGGGGTGCTTTTTCTTAGTCTGTTTCCTTACCGAATATCGAGT
TTAATTTGcagttttcttttaatttaaaccaaaaacgtctttttttcttg
attgaGAGGTTGAAACGAGGATGGCGAAAATAACAAGCATCGTAACACCT
ATGATCTGCCAAACGAAGGAC
Run BLAST on NCBI

protein sequence of TCONS_00028548-protein

>TCONS_00028548-protein ID=TCONS_00028548-protein|Name=TCONS_00028548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=906bp
MNNLEEPDEAIEGTYGGPYMVEQIIAIYVGKDRKKYYRVKWVDSWEPEDN
LSEACSALIDNFWSSSARDQTGKEVNRTELKAGQKIIKKEIIESRLNNEN
NPDSPTESYIGNNKVVPTLKSDISAHKDEINVQIPSTSGEKIKKLKQELM
SPTATTFPDKSQSVPPDLGKIQHELLSKSKIEAPSKQADKKVNNNESQQI
VKIQTTSTSTQATKDVHQKPQNKSPKRRSIDCQTQTDPVLDDIIEFDDPP
RVLSPVQHHSISIGTDPPTATQRSTNHTEPFSNRQPYSDSDSEKIVNFQD
GRMGNQEGYSSQNLNDELPYLNDELEQTIYQSQPNPPTQRSINDPNFPNQ
QNLNKQSYQSINEPSHPGPPSIDASDEQSMDESDIVDLASEEDELEITFS
LSTPPSKRQCLDKSKQKQLPASTSRLEKRTREKVTMRRRRNSDSERNTST
ANTGNNMPLLHPRSLLSMYPNGQQPTGNQAQNTINNASNSPQQIPNQENL
QAQTTLRRTLIPSNTGVNNNIQSSNTLPGANTNPVAKLTDRTCNLCKHTF
PNLTLARQHMKKMHATPSSTATNQINLQTRPTNNVNNNPTQSPQQRSSTT
VPTKELSCTVCFGLFRNNRDLKSHMLLHTEKNMHQCEVCLKAFRHKSTLA
QHMLIHTQELPFECKTCGQKFRQRGHLITHMGKHTQNSEGSLHCPYCSLI
SKDINEFRNHVRSHEQELPFKCSQCSERFQKRHDLSLHLDAHNEGRPFTC
PICKKSFKTKPYLFGHMQMHKSNDVIQRPQQTNRPMQQSHPQFQQSGHQA
QHPNHQAQHPNHQIQQPTQRINQQLNRNTTSPMLSTHQAQQRSRQHPQQQ
QQSPIINNNNSQQNKLLNPSQRLQQQRKNSLSNPTPPQQTQPKPPTTVSV
KTQSES
Run BLAST on NCBI

transcript from alignment at sc0000691:117366..124312+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028548 ID=TCONS_00028548|Name=TCONS_00028548|organism=Clytia hemisphaerica|type=transcript|length=6947bp|location=Sequence derived from alignment at sc0000691:117366..124312+ (Clytia hemisphaerica)
CGACAGCCTTTGAAGGCTTGATTTATAtatgtaatttatgcaatgATTAA
GCTGCGCGCCTTGTTCGCCAACCATAAAATGCTGACTTTACAGTTAAATG
CCTTGATGCAAATGACCTTACAACCAAAACAACCTGAAGGGAGTGTCCAA
TCAAAACTTTAGTTTTGCTTGCTTTTAGGTATAACAGTTTGCTTTTTGGG
TGTTATTCACTTGTGTGCCATACAGCATTTCAATTAAATTTaccttttta
caaattttagtttttttaaatgaatgaTAAATAAGAGAAATGAATAACCT
TGAAGAACCAGATGAAGCAATTGAAGGGACTTATGGTGGACCTTACATGG
TTGAGCAAATCATAGCCATTTATGTTGGAAAGGTAATTTTTAGTTATAAA
Tacgtaccgtcaactgctctaacttgggacgattggtcaaaacatgggac
tgttgatatctggcctgaaTTTTCAATTATTGTTAAATCTCGTTGACAAC
aaatttatcaatcatactttctgtcataatatGTCACGATAACTTACACT
GATagtgcgccctttttaacttttttgtttacattcaaAATGACTGAACA
CCGATTGGAGAACTAGAGAATGCCCATCGCCTAACcacctatcgcccgat
gggattaacaaacaACGAGTGTGTAGCTTGCCGCACGAGTGACGTCAATT
GCTCCATCactttgccactaatttgttcttcttcgttccaggcGCTCGCG
TGtattccactacagatttttttcatatttcaatttcaaagcgTATCGTa
atttggtctaatgtcgacatcccttgtctaattccgacacccttctttaa
agataggaataatatgaaaatttgaatcactgattgaaaaaggattattc
ctctctgaccactaagcaaagaaaaatagtttcaacttttctatcaattt
cagcttaTAAAatgggtgtcagaattagacgagggatgtcgacattagac
caaattACGATACGTAGATGCtcctaaaaattattttaaaggtgtCCCAT
AAATACCCCGCAttttggggtaattacgggacacccttggggtaattatg
ggacaggtataaaatgttattgaaaaatccagatatctttccaaaaggCT
ATGATATTTGAGGTTTTGCATCCACTTGATGACTTCAAATCCAANTCCCA
TGTTtggtcagatagtcccaagttagcagttgacggtaaattttcaaaaa
aatgaaaaatgctctGTGATTTTAGCAATCATCAAACATGCCAATGTATT
GTAACCTTGGTTGTTTTATGGACCACAAAGAGGGTCTTTCAAAAGTCCAA
TTCTAAAGGTCTAAAGGTCCAGGTCTTCCCCAATTCTAAAGTCCTTTTTT
ATAGAAACTTTTTGGTGTTTGGTTTGATGTTTTGTCACTATTTTTTATCT
AAGGgcctattttttttataaagtccATCAAAATGAGTTGCTAAGATTTA
AAAAGGCCATGATAATTTCCAAAATAGTTTAAGTCCAGTTGGGGTCTGTA
CTAAGTTGTAGAGACCACTGCCGGGTGGGTGGTCAAAATtggcaagttaa
gaacaatttagtTCCACGTACTACTATTCTTTCAAAAAGCTAATTTTCTA
CTTAGTACCTTGTGTAATTCTGGTCTAAAAATGCAGTGATGACCAAGAAT
TTTTGGGTCGGCGAGAAAAGAGTTGATAATAATATAATACCTCATTATCT
AACAACATCTTAGAAAAGTTTTTGCAAgggaatttaaaaatatataacac
tTTTGGTACTGCGCTCTCTTTGAACCATATTCGGGAGAATTATATATGTA
AAATATGTGCTTTTAGGGTGATACTTTGCTTTCCCGtcaaattttctgga
ttttacTGGGTATTTCCAGGTAGTTTTGGCGTGGTCTATCTACATTGAAA
ACATAATATCAACTCTGTACCATAGTACAGAGATGACTTCTTTCCCAAAA
ACAAGTTCGTACACATTTCTGGCACTGGTCCAGTAGCCCAACTATGTACC
CCCTactaaaagtttttaaattgtGTCCTTGTCTATCTTATTGAGATTGT
CTTTTCTGTCTATCAATAACTATTTTATCATTCCATAATAGGACCGCAAA
AAATATTATCGTGTGAAATGGGTGGACAGTTGGGAACCCGAAGACAACTT
ATCAGAAGCTTGTTCTGCACTGATTGATAATTTCTGGTCTAGTTCGGCAC
GTGATCAAACAGGCAAAGAAGTCAATAGAACAGAATTAAAGGTACTTATT
AGTGTACTACAGTTTTATTATATCATTAACGAGAAGGTTGACATCTAAAT
TATTGTTTTAAATGAGGGATGGTAAATGCCTttccaaaaaagtaaaaaaa
aaatttcgtgcCTAGACCTATCGAAAAtactgtaacttggtctaatgtca
acatccctcatcTGGGTGAATTGCAGAAAATAGTACAATGTCCCGTCCGC
ATCAGGCACTTTTTGAGGACCCATAACTCAACTTTGGCAAATGCAATTTC
TAAGAACTTCACATTTTTGTGAACTCTACTNTTGAAGTGAAGAAAGGCAA
AAATTTGCACATTTTCGCTCTCATGGAATAAAGAATTGTGTTATTTTAAG
AATTCGACGCTCAAATCGATCTGTCATTTCCAGATTGATCTTTAAAAGAT
AATTGGTAGACCTTAGGGCCCAAAcagaaaatattcttttggcaagtgtt
ttaatgatttttagctttttgattATTTAAATCAAANGGACagaacaaaa
agtttttcactCATAGCTAGTACATGTAAAGTCAATAAAAATGATACTGC
TGCAAAAAGCATGTGGTTCCCTATAGTTCATTGGCTTGATACAGTTAGAA
CATTAAAGTTGtctcaaaaaaagagaaattttaaGACTTTTGTGCCGTTG
CGGACGGGACAAATTTTTGGACCATATTAGTTTTTAccagttaaaaaatt
aaaaatagattATTTAAAGGCAATAAATGTCTTTAACGCAAGAAACCATT
TAATATgtcacaacaaaacaaaaatggggGTCCTCTAGTTCGCAGATCTT
GACTTGTAAGCATAAATGGAGCTTTTGTTGCGGATGGGACATTGTACTAT
TTTTCTGCAATTCACCCATCTAATTGAGACACCctttttagagttgaaaa
taatataaaagtcgaaaatatttttctcttcttcacTAAGTCAAAGATGA
Aagatcctttttcaatcagtgattccaactttcatattattcctacctct
aaagaagggtgtcggaattagatgagggatgtcggaATTATGTCAGAATT
AGATGAGAGATGTCGACATCAGAGCAACTTACAGTAAAAGGATAAGGTTG
AAGTGAAGAAAGGCAAAAATTTGCACATTTTCGCTCTCATGGAATATAGA
ATTGTGTTATTTTAAGAATTCGACGCTCAAATCGATCTGTCATTTCCAGA
TTGATCTTTAAAAGATAATTGGTAGACCTTAGGGCCCAAAcagaaaatat
tcttttggcaagtgttttaatgatttttagctttttgattATTTAAATCA
AATAGAATACAATCTTCTGATGAGAAAACATGTATTCCtgatatgcatca
ctgcaatgtcttcgaTATCACACCTTAGACCTAACagtgattggttgtaa
gtgacgtaaaatcggtcaatacgtcacttgcaaccaatcagctgttaggt
ccgtgatgtaatgttagaagacatcgCAATGGTGCATAGCACCAAACTTA
CATTTTGGTTCAGATTTTTTGGCAGTTAGTTTTCTGAAGTTTTGCCTGAA
AAGGCTCATACTGACATCATCAGCAACTTATAAAAAcctttgtaactttt
gataggttAACACgtattcaaaagtttttttatcaattctGCTTCCATTT
TTAATGTGAGGtggaaacgaaaaaaaatttgaaaatagaaaaatattgat
aatataTCAGGTTgatatcttttcaaataaaacatttttttgtctaACTT
TTGTCTAGGCTggtcaaaaaatcatcaagaaaGAAATCATAGAATCAAGG
CTGAACAATGAAAACAACCCTGACTCGCCAACGGAAAGTTATATCGGTAA
CAATAAAGTTGTACCTACACTCAAGTCAGATATCAGTGCACATAAAGATG
AAATCAACGTTCAAATACCATCAACTTCTggtgagaaaatcaaaaaattg
aaacaagaaCTCATGTCACCTACTGCTACTACTTTCCCCGATAAATCCCA
AAGTGTACCACCTGATTTAGGCAAAATACAACATGAActattatcaaaat
caaaaatagaaGCTCCTTCAAAACAAGCCGATAAGAAAGTCAACAATAAT
GAAAGTCAACAAATAGTAAAGATTCAAACAACGTCTACCTCAACTCAAGC
AACAAAAGATGTTCACCAAAAACCACAAAATAAATCACCTAAACGTAGAT
CAATAGATTGTCAAACACAAACTGACCCCGTCCTTGATGATATCATTGAA
TTTGATGATCCTCCACGTGTTTTATCACCTGTCCAACACCACTCTATCAG
TATTGGTACAGATCCACCAACGGCAACACAACGTTCAACAAACCACACTG
AACCATTCAGTAATAGACAACCATATTCAGATTCAGATTCTGAGAAAATA
GTGAATTTCCAAGATGGAAGAATGGGTAATCAAGAAGGATACAGCTCACA
GAATCTTAATGATGAACTTCCTTATCTTAATGATGAGCTTGAACAAACAA
TTTACCAATCTCAACCAAATCCCCCGACTCAACGATCAATCAATGATCCG
AATTTCCCTAACCAACAGAACCTCAATAagcaaagttatcaatcaatcaa
cgaACCAAGCCATCCAGGTCCACCAAGCATTGATGCGTCTGATGAACAAT
CAATGGACGAGAGTGATATTGTAGACCTAGCCAGCGAAGAAGACGAACTG
GAAATCACATTCTCCTTATCAACTCCACCAAGTAAACGTCAATGTCTTGA
TAAGAGTAAACAAAAACAGCTTCCGGCAAGCACAAGTCGACTGGAGAAAA
GAACTCGTGAAAAAGTTACCATGAGACGTCGCAGGAATAGTGATAGCGAG
AGGAATACAAGTACAGCTAATACTGGCAATAACATGCCTTTACTTCATCC
GAGAAGCTTATTATCAATGTATCCAAATGGTCAACAACCAACTGGCAACC
AAGCTCAAAATACAATCAACAATGCATCTAACTCACCACAACAAATACCC
AACCAAGAAAACCTCCAAGCACAAACAACACTCAGAAGAACTCTTATTCC
CAGCAACACTGGAGTAAACAACAATATACAATCCTCGAACACTTTACCTG
GTGCTAATACAAACCCAGTTGCTAAATTAACTGACAGGACATGTAATCTC
TGTAAACACACATTCCCAAATTTAACATTAGCTCGTCAACACATGAAAAA
GATGCACGCAACGCCTTCATCGACCGCCACAAAccaaataaatttacaga
ccagaccaacaaataatgtaaacaataATCCAACCCAATCACCACAGCAA
CGTTCATCAACAACTGTCCCTACCAAAGAACTCTCCTGTACCGTTTGCTT
TGGTCTTTTCCGTAATAATCGCGACTTAAAATCACACATGCTGCTTCATA
CTGAGAAAAACATGCATCAATGTGAAGTTTGTTTGAAAGCTTTTCGTCAC
AAGTCCACACTTGCACAACACATGTTGATCCATACCCAAGAACTACCTTT
CGAGTGTAAAACTTGTGGTCAAAAGTTTCGACAACGAGGTCATTTGATTA
CACACATGGGCAAACATACACAAAACAGTGAAGGATCTCTCCATTGTCCG
TATTGTTCACTCATCAGTAAAGACATCAATGAATTCCGAAACCATGTTCG
CTCACATGAACAAGAATTACCTTTCAAATGTAGTCAGTGCTCAGAGAGAT
TCCAAAAACGCCATGATTTATCGTTACACTTGGACGCACACAACGAAGGT
CGTCCTTTCACATGCCCCATATgcaagaaatcttttaaaaccaAACCGTA
TCTTTTCGGGCACATGCAAATGCATAAATCGAATGATGTCATTCAAAGAC
CTCAGCAAACTAATAGACCAATGCAGCAAAGTCATCCACAATTTCAACAA
TCTGGACATCAAGCTCAGCATCCTAATCACCAAGCTCAGCATCCTAATCA
CCAGATCCAACAACCAACTCAACGAATAAATCAGCAATTAAATAGAAACA
CAACTTCACCCATGTTATCTACACATCAAGCACAACAAAGATCACGGCAA
CAtcctcaacaacaacaacaaagtcCGATCATCAACAACAATAATAGTCA
ACAAAATAAACTGTTGAATCCTTCTCAAAGATTGCAACAACAGAGAAAAA
ACAGTTTATCAAACCCAACACCTCCTCAACAGACACAACCTAAGCCTCCT
ACTACAGTCTCAGTGAAAACACAATCTGAAAGTTAAAAGATTCTTTGCAT
GTATGTATCTAGGGATCTTTGGTTTGGTTGTATGGTATGTATTTTGCTGA
GATTCTTGGCTGGACGTTACCTGATTTTCTTCTGTATATTCTTTTGAAAt
gcatttgtttttatttaatgaTGGCTTTGTAGGTTTTCATTGGCTGTGTT
AGATTGTATTgtatttgtttaaaattttgtttctttattTATTAGCGATG
ACTACCTTAAATTGGGAAAGTCCCTCGCCATTTTGGGGTGCTTTTTCTTA
GTCTGTTTCCTTACCGAATATCGAGTTTAATTTGcagttttcttttaatt
taaaccaaaaacgtctttttttcttgattgaGAGGTTGAAACGAGGATGG
CGAAAATAACAAGCATCGTAACACCTATGATCTGCCAAACGAAGGAC

Coding sequence (CDS) from alignment at sc0000691:117366..124312+

>TCONS_00028548 ID=TCONS_00028548|Name=TCONS_00028548|organism=Clytia hemisphaerica|type=CDS|length=8163bp|location=Sequence derived from alignment at sc0000691:117366..124312+ (Clytia hemisphaerica)
ATGAATAACCTTGAAGAACCAGATGAAGCAATTGAAGGGACTTATGGTGG
ACCTTACATGGTTGAGCAAATCATAGCCATTTATGTTGGAAAGGACCGCA
AAAAATATTATCGTGTGAAATGGGTGGACAGTTGGGAACCCGAAGACAAC
TTATCAGAAGCTTGTTCTGCACTGATTGATAATTTCTGGTCTAGTTCGGC
ACGTGATCAAACAGGCAAAGAAGTCAATAGAACAGAATTAAAGGCTggtc
aaaaaatcatcaagaaaGAAATCATAGAATCAAGGCTGAACAATGAAAAC
AACCCTGACTCGCCAACGGAAAGTTATATCGGTAACAATAAAGTTGTACC
TACACTCAAGTCAGATATCAGTGCACATAAAGATGAAATCAACGTTCAAA
TACCATCAACTTCTggtgagaaaatcaaaaaattgaaacaagaaCTCATG
TCACCTACTGCTACTACTTTCCCCGATAAATCCCAAAGTGTACCACCTGA
TTTAGGCAAAATACAACATGAActattatcaaaatcaaaaatagaaGCTC
CTTCAAAACAAGCCGATAAGAAAGTCAACAATAATGAAAGTCAACAAATA
GTAAAGATTCAAACAACGTCTACCTCAACTCAAGCAACAAAAGATGTTCA
CCAAAAACCACAAAATAAATCACCTAAACGTAGATCAATAGATTGTCAAA
CACAAACTGACCCCGTCCTTGATGATATCATTGAATTTGATGATCCTCCA
CGTGTTTTATCACCTGTCCAACACCACTCTATCAGTATTGGTACAGATCC
ACCAACGGCAACACAACGTTCAACAAACCACACTGAACCATTCAGTAATA
GACAACCATATTCAGATTCAGATTCTGAGAAAATAGTGAATTTCCAAGAT
GGAAGAATGGGTAATCAAGAAGGATACAGCTCACAGAATCTTAATGATGA
ACTTCCTTATCTTAATGATGAGCTTGAACAAACAATTTACCAATCTCAAC
CAAATCCCCCGACTCAACGATCAATCAATGATCCGAATTTCCCTAACCAA
CAGAACCTCAATAagcaaagttatcaatcaatcaacgaACCAAGCCATCC
AGGTCCACCAAGCATTGATGCGTCTGATGAACAATCAATGGACGAGAGTG
ATATTGTAGACCTAGCCAGCGAAGAAGACGAACTGGAAATCACATTCTCC
TTATCAACTCCACCAAGTAAACGTCAATGTCTTGATAAGAGTAAACAAAA
ACAGCTTCCGGCAAGCACAAGTCGACTGGAGAAAAGAACTCGTGAAAAAG
TTACCATGAGACGTCGCAGGAATAGTGATAGCGAGAGGAATACAAGTACA
GCTAATACTGGCAATAACATGCCTTTACTTCATCCGAGAAGCTTATTATC
AATGTATCCAAATGGTCAACAACCAACTGGCAACCAAGCTCAAAATACAA
TCAACAATGCATCTAACTCACCACAACAAATACCCAACCAAGAAAACCTC
CAAGCACAAACAACACTCAGAAGAACTCTTATTCCCAGCAACACTGGAGT
AAACAACAATATACAATCCTCGAACACTTTACCTGGTGCTAATACAAACC
CAGTTGCTAAATTAACTGACAGGACATGTAATCTCTGTAAACACACATTC
CCAAATTTAACATTAGCTCGTCAACACATGAAAAAGATGCACGCAACGCC
TTCATCGACCGCCACAAAccaaataaatttacagaccagaccaacaaata
atgtaaacaataATCCAACCCAATCACCACAGCAACGTTCATCAACAACT
GTCCCTACCAAAGAACTCTCCTGTACCGTTTGCTTTGGTCTTTTCCGTAA
TAATCGCGACTTAAAATCACACATGCTGCTTCATACTGAGAAAAACATGC
ATCAATGTGAAGTTTGTTTGAAAGCTTTTCGTCACAAGTCCACACTTGCA
CAACACATGTTGATCCATACCCAAGAACTACCTTTCGAGTGTAAAACTTG
TGGTCAAAAGTTTCGACAACGAGGTCATTTGATTACACACATGGGCAAAC
ATACACAAAACAGTGAAGGATCTCTCCATTGTCCGTATTGTTCACTCATC
AGTAAAGACATCAATGAATTCCGAAACCATGTTCGCTCACATGAACAAGA
ATTACCTTTCAAATGTAGTCAGTGCTCAGAGAGATTCCAAAAACGCCATG
ATTTATCGTTACACTTGGACGCACACAACGAAGGTCGTCCTTTCACATGC
CCCATATgcaagaaatcttttaaaaccaAACCGTATCTTTTCGGGCACAT
GCAAATGCATAAATCGAATGATGTCATTCAAAGACCTCAGCAAACTAATA
GACCAATGCAGCAAAGTCATCCACAATTTCAACAATCTGGACATCAAGCT
CAGCATCCTAATCACCAAGCTCAGCATCCTAATCACCAGATCCAACAACC
AACTCAACGAATAAATCAGCAATTAAATAGAAACACAACTTCACCCATGT
TATCTACACATCAAGCACAACAAAGATCACGGCAACAtcctcaacaacaa
caacaaagtcCGATCATCAACAACAATAATAGTCAACAAAATAAACTGTT
GAATCCTTCTCAAAGATTGCAACAACAGAGAAAAAACAGTTTATCAAACC
CAACACCTCCTCAACAGACACAACCTAAGCCTCCTACTACAGTCTCAGTG
AAAACACAATCTGAAAGTTAAATGAATAACCTTGAAGAACCAGATGAAGC
AATTGAAGGGACTTATGGTGGACCTTACATGGTTGAGCAAATCATAGCCA
TTTATGTTGGAAAGGACCGCAAAAAATATTATCGTGTGAAATGGGTGGAC
AGTTGGGAACCCGAAGACAACTTATCAGAAGCTTGTTCTGCACTGATTGA
TAATTTCTGGTCTAGTTCGGCACGTGATCAAACAGGCAAAGAAGTCAATA
GAACAGAATTAAAGGCTggtcaaaaaatcatcaagaaaGAAATCATAGAA
TCAAGGCTGAACAATGAAAACAACCCTGACTCGCCAACGGAAAGTTATAT
CGGTAACAATAAAGTTGTACCTACACTCAAGTCAGATATCAGTGCACATA
AAGATGAAATCAACGTTCAAATACCATCAACTTCTggtgagaaaatcaaa
aaattgaaacaagaaCTCATGTCACCTACTGCTACTACTTTCCCCGATAA
ATCCCAAAGTGTACCACCTGATTTAGGCAAAATACAACATGAActattat
caaaatcaaaaatagaaGCTCCTTCAAAACAAGCCGATAAGAAAGTCAAC
AATAATGAAAGTCAACAAATAGTAAAGATTCAAACAACGTCTACCTCAAC
TCAAGCAACAAAAGATGTTCACCAAAAACCACAAAATAAATCACCTAAAC
GTAGATCAATAGATTGTCAAACACAAACTGACCCCGTCCTTGATGATATC
ATTGAATTTGATGATCCTCCACGTGTTTTATCACCTGTCCAACACCACTC
TATCAGTATTGGTACAGATCCACCAACGGCAACACAACGTTCAACAAACC
ACACTGAACCATTCAGTAATAGACAACCATATTCAGATTCAGATTCTGAG
AAAATAGTGAATTTCCAAGATGGAAGAATGGGTAATCAAGAAGGATACAG
CTCACAGAATCTTAATGATGAACTTCCTTATCTTAATGATGAGCTTGAAC
AAACAATTTACCAATCTCAACCAAATCCCCCGACTCAACGATCAATCAAT
GATCCGAATTTCCCTAACCAACAGAACCTCAATAagcaaagttatcaatc
aatcaacgaACCAAGCCATCCAGGTCCACCAAGCATTGATGCGTCTGATG
AACAATCAATGGACGAGAGTGATATTGTAGACCTAGCCAGCGAAGAAGAC
GAACTGGAAATCACATTCTCCTTATCAACTCCACCAAGTAAACGTCAATG
TCTTGATAAGAGTAAACAAAAACAGCTTCCGGCAAGCACAAGTCGACTGG
AGAAAAGAACTCGTGAAAAAGTTACCATGAGACGTCGCAGGAATAGTGAT
AGCGAGAGGAATACAAGTACAGCTAATACTGGCAATAACATGCCTTTACT
TCATCCGAGAAGCTTATTATCAATGTATCCAAATGGTCAACAACCAACTG
GCAACCAAGCTCAAAATACAATCAACAATGCATCTAACTCACCACAACAA
ATACCCAACCAAGAAAACCTCCAAGCACAAACAACACTCAGAAGAACTCT
TATTCCCAGCAACACTGGAGTAAACAACAATATACAATCCTCGAACACTT
TACCTGGTGCTAATACAAACCCAGTTGCTAAATTAACTGACAGGACATGT
AATCTCTGTAAACACACATTCCCAAATTTAACATTAGCTCGTCAACACAT
GAAAAAGATGCACGCAACGCCTTCATCGACCGCCACAAAccaaataaatt
tacagaccagaccaacaaataatgtaaacaataATCCAACCCAATCACCA
CAGCAACGTTCATCAACAACTGTCCCTACCAAAGAACTCTCCTGTACCGT
TTGCTTTGGTCTTTTCCGTAATAATCGCGACTTAAAATCACACATGCTGC
TTCATACTGAGAAAAACATGCATCAATGTGAAGTTTGTTTGAAAGCTTTT
CGTCACAAGTCCACACTTGCACAACACATGTTGATCCATACCCAAGAACT
ACCTTTCGAGTGTAAAACTTGTGGTCAAAAGTTTCGACAACGAGGTCATT
TGATTACACACATGGGCAAACATACACAAAACAGTGAAGGATCTCTCCAT
TGTCCGTATTGTTCACTCATCAGTAAAGACATCAATGAATTCCGAAACCA
TGTTCGCTCACATGAACAAGAATTACCTTTCAAATGTAGTCAGTGCTCAG
AGAGATTCCAAAAACGCCATGATTTATCGTTACACTTGGACGCACACAAC
GAAGGTCGTCCTTTCACATGCCCCATATgcaagaaatcttttaaaaccaA
ACCGTATCTTTTCGGGCACATGCAAATGCATAAATCGAATGATGTCATTC
AAAGACCTCAGCAAACTAATAGACCAATGCAGCAAAGTCATCCACAATTT
CAACAATCTGGACATCAAGCTCAGCATCCTAATCACCAAGCTCAGCATCC
TAATCACCAGATCCAACAACCAACTCAACGAATAAATCAGCAATTAAATA
GAAACACAACTTCACCCATGTTATCTACACATCAAGCACAACAAAGATCA
CGGCAACAtcctcaacaacaacaacaaagtcCGATCATCAACAACAATAA
TAGTCAACAAAATAAACTGTTGAATCCTTCTCAAAGATTGCAACAACAGA
GAAAAAACAGTTTATCAAACCCAACACCTCCTCAACAGACACAACCTAAG
CCTCCTACTACAGTCTCAGTGAAAACACAATCTGAAAGTTAAATGAATAA
CCTTGAAGAACCAGATGAAGCAATTGAAGGGACTTATGGTGGACCTTACA
TGGTTGAGCAAATCATAGCCATTTATGTTGGAAAGGACCGCAAAAAATAT
TATCGTGTGAAATGGGTGGACAGTTGGGAACCCGAAGACAACTTATCAGA
AGCTTGTTCTGCACTGATTGATAATTTCTGGTCTAGTTCGGCACGTGATC
AAACAGGCAAAGAAGTCAATAGAACAGAATTAAAGGCTggtcaaaaaatc
atcaagaaaGAAATCATAGAATCAAGGCTGAACAATGAAAACAACCCTGA
CTCGCCAACGGAAAGTTATATCGGTAACAATAAAGTTGTACCTACACTCA
AGTCAGATATCAGTGCACATAAAGATGAAATCAACGTTCAAATACCATCA
ACTTCTggtgagaaaatcaaaaaattgaaacaagaaCTCATGTCACCTAC
TGCTACTACTTTCCCCGATAAATCCCAAAGTGTACCACCTGATTTAGGCA
AAATACAACATGAActattatcaaaatcaaaaatagaaGCTCCTTCAAAA
CAAGCCGATAAGAAAGTCAACAATAATGAAAGTCAACAAATAGTAAAGAT
TCAAACAACGTCTACCTCAACTCAAGCAACAAAAGATGTTCACCAAAAAC
CACAAAATAAATCACCTAAACGTAGATCAATAGATTGTCAAACACAAACT
GACCCCGTCCTTGATGATATCATTGAATTTGATGATCCTCCACGTGTTTT
ATCACCTGTCCAACACCACTCTATCAGTATTGGTACAGATCCACCAACGG
CAACACAACGTTCAACAAACCACACTGAACCATTCAGTAATAGACAACCA
TATTCAGATTCAGATTCTGAGAAAATAGTGAATTTCCAAGATGGAAGAAT
GGGTAATCAAGAAGGATACAGCTCACAGAATCTTAATGATGAACTTCCTT
ATCTTAATGATGAGCTTGAACAAACAATTTACCAATCTCAACCAAATCCC
CCGACTCAACGATCAATCAATGATCCGAATTTCCCTAACCAACAGAACCT
CAATAagcaaagttatcaatcaatcaacgaACCAAGCCATCCAGGTCCAC
CAAGCATTGATGCGTCTGATGAACAATCAATGGACGAGAGTGATATTGTA
GACCTAGCCAGCGAAGAAGACGAACTGGAAATCACATTCTCCTTATCAAC
TCCACCAAGTAAACGTCAATGTCTTGATAAGAGTAAACAAAAACAGCTTC
CGGCAAGCACAAGTCGACTGGAGAAAAGAACTCGTGAAAAAGTTACCATG
AGACGTCGCAGGAATAGTGATAGCGAGAGGAATACAAGTACAGCTAATAC
TGGCAATAACATGCCTTTACTTCATCCGAGAAGCTTATTATCAATGTATC
CAAATGGTCAACAACCAACTGGCAACCAAGCTCAAAATACAATCAACAAT
GCATCTAACTCACCACAACAAATACCCAACCAAGAAAACCTCCAAGCACA
AACAACACTCAGAAGAACTCTTATTCCCAGCAACACTGGAGTAAACAACA
ATATACAATCCTCGAACACTTTACCTGGTGCTAATACAAACCCAGTTGCT
AAATTAACTGACAGGACATGTAATCTCTGTAAACACACATTCCCAAATTT
AACATTAGCTCGTCAACACATGAAAAAGATGCACGCAACGCCTTCATCGA
CCGCCACAAAccaaataaatttacagaccagaccaacaaataatgtaaac
aataATCCAACCCAATCACCACAGCAACGTTCATCAACAACTGTCCCTAC
CAAAGAACTCTCCTGTACCGTTTGCTTTGGTCTTTTCCGTAATAATCGCG
ACTTAAAATCACACATGCTGCTTCATACTGAGAAAAACATGCATCAATGT
GAAGTTTGTTTGAAAGCTTTTCGTCACAAGTCCACACTTGCACAACACAT
GTTGATCCATACCCAAGAACTACCTTTCGAGTGTAAAACTTGTGGTCAAA
AGTTTCGACAACGAGGTCATTTGATTACACACATGGGCAAACATACACAA
AACAGTGAAGGATCTCTCCATTGTCCGTATTGTTCACTCATCAGTAAAGA
CATCAATGAATTCCGAAACCATGTTCGCTCACATGAACAAGAATTACCTT
TCAAATGTAGTCAGTGCTCAGAGAGATTCCAAAAACGCCATGATTTATCG
TTACACTTGGACGCACACAACGAAGGTCGTCCTTTCACATGCCCCATATg
caagaaatcttttaaaaccaAACCGTATCTTTTCGGGCACATGCAAATGC
ATAAATCGAATGATGTCATTCAAAGACCTCAGCAAACTAATAGACCAATG
CAGCAAAGTCATCCACAATTTCAACAATCTGGACATCAAGCTCAGCATCC
TAATCACCAAGCTCAGCATCCTAATCACCAGATCCAACAACCAACTCAAC
GAATAAATCAGCAATTAAATAGAAACACAACTTCACCCATGTTATCTACA
CATCAAGCACAACAAAGATCACGGCAACAtcctcaacaacaacaacaaag
tcCGATCATCAACAACAATAATAGTCAACAAAATAAACTGTTGAATCCTT
CTCAAAGATTGCAACAACAGAGAAAAAACAGTTTATCAAACCCAACACCT
CCTCAACAGACACAACCTAAGCCTCCTACTACAGTCTCAGTGAAAACACA
ATCTGAAAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016183XLOC_016183Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028548-proteinTCONS_00028548-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028548-exon-sc0000691-1491911889:117366..117747TCONS_00028548-exon-sc0000691-1491911889:117366..117747Clytia hemisphaericaexon
TCONS_00028548-exon-sc0000691-1510915933:117366..117747TCONS_00028548-exon-sc0000691-1510915933:117366..117747Clytia hemisphaericaexon
TCONS_00028548-exon-sc0000691-1575043694:117366..117747TCONS_00028548-exon-sc0000691-1575043694:117366..117747Clytia hemisphaericaexon
TCONS_00028548-exon-sc0000691-1491911889:119507..119656TCONS_00028548-exon-sc0000691-1491911889:119507..119656Clytia hemisphaericaexon
TCONS_00028548-exon-sc0000691-1510915933:119507..119656TCONS_00028548-exon-sc0000691-1510915933:119507..119656Clytia hemisphaericaexon
TCONS_00028548-exon-sc0000691-1575043694:119507..119656TCONS_00028548-exon-sc0000691-1575043694:119507..119656Clytia hemisphaericaexon
TCONS_00028548-exon-sc0000691-1491911889:121424..124312TCONS_00028548-exon-sc0000691-1491911889:121424..124312Clytia hemisphaericaexon
TCONS_00028548-exon-sc0000691-1510915933:121424..124312TCONS_00028548-exon-sc0000691-1510915933:121424..124312Clytia hemisphaericaexon
TCONS_00028548-exon-sc0000691-1575043694:121424..124312TCONS_00028548-exon-sc0000691-1575043694:121424..124312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:117366..124312 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2537	14.5624	15.0199	14.1562	16.2955	12.9828	13.8172	14.4643	6.22687	9.14259	8.4376	5.04632	5.70044	5.61481	4.94855	6.69709	7.34646	6.7565	2.92363	3.18223	6.17263	4.985	9.28301	10.6387	13.4243	12.7852	1.65085	1.27692	6.69369	7.90648
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00028548 vs. Swiss-Prot (Human)
Match: MZF1 (Myeloid zinc finger 1 OS=Homo sapiens GN=MZF1 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.870e-28
Identity = 62/166 (37.35%), Postives = 85/166 (51.20%), Query Frame = 2 
Query: 2105 LSCTVCFGLFRNNRDLKSHMLLHTEKNMHQCEVCLKAFRHKSTLAQHMLIHTQELPFECKTCGQKFRQRGHLITHMGKHTQNSEGSLHCPYCSLISKDINEFRNHVRSHEQELPFKCSQCSERFQKRHDLSLHLDAHNEGRPFTCPICKKSFKTKPYLFGHMQMHK 2602
             +C  C   FR   +L  H  +HT +    C  C KAFR + TL QH+ +HT E PF C  CGQ+F QR  L  H   HT   E   HC  C L    ++    H R H  E PF C +C + F++  +L+ H   H   RP+ CP C K+F+ +P L  H++ H+
Sbjct:  541 FACAECGQSFRQRSNLTQHRRIHTGERPFACAECGKAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHT--GEKPYHCGECGLGFTQVSRLTEHQRIHTGERPFACPECGQSFRQHANLTQHRRIHTGERPYACPECGKAFRQRPTLTQHLRTHR 704

HSP 2 Score: 92.8189 bits (229), Expect = 4.774e-19
Identity = 54/163 (33.13%), Postives = 71/163 (43.56%), Query Frame = 2 
Query: 2111 CTVCFGLFRNNRDLKSHMLLHTEKNMHQCEVCLKAFRHKSTLAQHMLIHTQELPFECKTCGQKFRQRGHLITHMGKHTQNSEGSLHCPYCSLISKDINEFRNHVRSHEQELPFKCSQCSERFQKRHDLSLHLDAHNEGRPFTCPICKKSFKTKPYLFGHMQMH 2599
            C+ C   F     L  H  +HT      C  C + F  +S L QH  +H+ E PF C  CGQ FRQR +L  H   HT   E    C  C    +       H+R H  E PF C +C +RF +R  L+ H   H   +P+ C  C   F     L  H ++H
Sbjct:  487 CSECRESFARRAVLLEHQAVHTGDKSFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSFRQRSNLTQHRRIHT--GERPFACAECGKAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHTGEKPYHCGECGLGFTQVSRLTEHQRIH 647

HSP 3 Score: 91.2781 bits (225), Expect = 1.603e-18
Identity = 59/222 (26.58%), Postives = 84/222 (37.84%), Query Frame = 2 
Query: 2105 LSCTVCFGLFRNNRDLKSHMLLHTEKNMHQCEVCLKAFRHKSTLAQHMLIHTQELPFECKTCGQKFRQRGHLITHMGKH-------------------------------------------TQNSEGSLHCPYCSLISKDINEFRNHVRSHEQELPFKCSQCSERFQKRHDLSLHLDAHNEGRPFTCPICKKSFKTKPYLFGHMQMHKSNDVIQRPQQTNR 2641
              C+ C   F  +  L  H L HTE+    C  C + F   + L +H  +HT E PF C  CGQ FRQR +L+ H   H                                               + S  C  C       +    H R H  E PF C++C + F++R +L+ H   H   RPF C  C K+F+ +P L  H+++H        P+   R
Sbjct:  384 FVCSECGRSFSRSSHLLRHQLTHTEERPFVCGDCGQGFVRSARLEEHRRVHTGEQPFRCAECGQSFRQRSNLLQHQRIHGDPPGPGAKPPAPPGAPEPPGPFPCSECRESFARRAVLLEHQAVHTGDKSFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSFRQRSNLTQHRRIHTGERPFACAECGKAFRQRPTLTQHLRVHTGEKPFACPECGQR 605
The following BLAST results are available for this feature:
BLAST of TCONS_00028548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MZF12.870e-2837.35Myeloid zinc finger 1 OS=Homo sapiens GN=MZF1 PE=1... [more]
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