TCONS_00028703-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00028703-protein
Unique Name	TCONS_00028703-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1113

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00028703-protein ID=TCONS_00028703-protein|Name=TCONS_00028703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1113bp
MPNKKKNKGGGGLFSCFGGGTDDQPEIRYEPDGGGGTLPTMENNEPMPDI
NELDEKFAAVVDEFDLTAVHRKKMFELPPEKKWQIICSNSKGQHEGSVAT
FDFYIDRLRAYTTLYYQRTDEELRERTRFLQELKTALRTQPVSFVQGFLN
GDGLQSLIDVLANMDWETCESTVHTACIGCLKALMNNTNGRSEVLAHPNC
INIITQSLITENVKTKTAVLEILGACCLVPGGHKKVLDAMCHYQQYAEER
TRFQTIINDLDRSTGLFRDEFSSKIAIMSFINAALRYGAGADHLEFRIHL
RYELLMLGLQPIMDKLRKLENPTLGRHLDFFDMVRNEDEKELTKRYGVQQ
IDAKSASSMLDVLKQKIGHTPSYVHLLSIMQHLLLLPVDAKKGLSYWRII
DRIIQEIALQQRDGTDPDMAPIDIHVKHIIEKMTTEDFKDDTVSKLAKRE
SEMAEMRSTVEKMADKLDKETREHEETKKRCDELINKAKKLEQQLNVEMV
SRMKLEEVVKEVGASIPDDAKIANLASMGALPPSMIAAAAASSPASPPPP
PNMGALPPPPAPPGFGPPPPPQPPGMGGFAPPPPPPAPGGPPPPPGMGLP
GFNNKKKSKLPKPSQPLKSFNWTKIPDVKLKGTIFSDLDENQIIPLLDFK
RIDKAFSAYQKKEEYEQRDLKDPEQDQEDGGSVLNFKPKELSFIDNRRAQ
NCQIMLKNVNQPNEVIREAVCTMDVEDRLTRDMVEQMLKFIPTPDEANLF
NTHANESHQFAAGDSYLYEMSKIPHFEQRLKALYYQKGFSERVGDIKPKI
ECVIRACKQVSRSKRLKTLFEVILCFGNYMNKGSRANASGFKVSSLNKII
DTKSSSDKRVTLLHFIITVLEMKFPSVFQLEEELPDIRSAAKVNPAELTK
ELQLLRAGIVEIEKELQYQSTLKKKDRLPNDRFVETVGSFVKVANFSIQE
VDEIYKEMEDRLVKTFSLFGEDPKSTAGEDFFGVFNGFLNSFAESKGENV
QMQKQKEEEERKAKSLAQQREKERQRSAAKKLMSDNLSAEDKRKSLSERS
PGEFDDLISALRTGDVFGDEMTMFSKQGRKRTGKQRNAVNAPKKMSVIDR
DRRVDQTAIAEML

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_016283	XLOC_016283	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00028703	TCONS_00028703	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015425	FH2_Formin
IPR010472	FH3_dom
IPR010473	GTPase-bd
IPR011989	ARM-like
IPR014767	DAD_dom
IPR014768	GBD/FH3_dom
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003779	actin binding
GO:0017048	Rho GTPase binding
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016043	cellular component organization
GO:0030036	actin cytoskeleton organization

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030036	actin cytoskeleton organization
biological_process	GO:0016043	cellular component organization
molecular_function	GO:0003779	actin binding
molecular_function	GO:0005488	binding
molecular_function	GO:0017048	Rho GTPase binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1029..1049
None	No IPR available	COILS	Coil	Coil	coord: 992..1026
None	No IPR available	COILS	Coil	Coil	coord: 446..501
None	No IPR available	GENE3D	1.20.5.340		coord: 425..1051 e-value: 1.6E-7 score: 30.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1075..1095
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 663..684
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 540..620
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1001..1051
None	No IPR available	SUPERFAMILY	101447	Formin homology 2 domain (FH2 domain)	coord: 581..1012
IPR015425	Formin, FH2 domain	SMART	SM00498	it6_source	coord: 607..1069 e-value: 4.3E-92 score: 321.9
IPR015425	Formin, FH2 domain	PFAM	PF02181	FH2	coord: 608..992 e-value: 2.9E-96 score: 322.7
IPR015425	Formin, FH2 domain	PROSITE	PS51444	FH2	coord: 607..1018 score: 68.203
IPR010472	Formin, FH3 domain	SMART	SM01139	Drf_FH3_2	coord: 231..423 e-value: 4.1E-68 score: 242.3
IPR010472	Formin, FH3 domain	PFAM	PF06367	Drf_FH3	coord: 231..416 e-value: 3.5E-52 score: 176.7
IPR010473	Formin, GTPase-binding domain	SMART	SM01140	Drf_GBD_2	coord: 45..228 e-value: 2.5E-61 score: 219.7
IPR010473	Formin, GTPase-binding domain	PFAM	PF06371	Drf_GBD	coord: 47..228 e-value: 4.6E-42 score: 143.6
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 111..342 e-value: 6.9E-57 score: 191.8
IPR014767	Diaphanous autoregulatory (DAD) domain	PROSITE	PS51231	DAD	coord: 1047..1087 score: 9.265
IPR014768	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	PROSITE	PS51232	GBD_FH3	coord: 45..415 score: 27.564
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 53..418

Blast

[Close]

BLAST of TCONS_00028703-protein vs. Swiss-Prot (Human)
Match: DAAM1 (Disheveled-associated activator of morphogenesis 1 OS=Homo sapiens GN=DAAM1 PE=1 SV=2)

HSP 1 Score: 863.603 bits (2230), Expect = 0.000e+0
Identity = 479/1104 (43.39%), Postives = 684/1104 (61.96%), Query Frame = 0

Query:    2 PNKKKNKGGGGLFSCFGGGTDDQPEIRYE-PDGGGGTLPTMENNEPMPDINELDEKFAAVVDEFDLTAVHRKKMFELPPEKKWQIICSNSKGQHEGSVATF--DFYIDRLRAY----TTLYYQRTDEELRERTRFLQELKTALRTQPVSFVQGFLNGDGLQSLIDVLANMDWETCESTVHTACIGCLKALMNNTNGRSEVLAHPNCINIITQSLITENVKTKTAVLEILGACCLVPGGHKKVLDAMCHYQQYAEERTRFQTIINDLDRSTGLFRDEFSSKIAIMSFINAALRYGAGADHLEFRIHLRYELLMLGLQPIMDKLRKLENPTLGRHLDFFDMVRNEDEKELTKRYGVQQIDAKSASSMLDVLKQKIGHTPSYVHLLSIMQHLLLLPVD-AKKGLSYWRIIDRIIQEIALQQRDGTDPDMAPI-DIHVKHIIEKMTTEDFKDDTVSKLAKRESEMAE-MRSTVEKMADKLDKETREHEETKKRCDELINKAKKLEQQLNVEMVSRMKLEEVVKEVGASIPDDAKIANLASMGALPPSMIAAAAASSPASPPPPPNMGALPPPPAPPGFGPPPPPQPPGMGGF------APPPPPPAPGGPPPPPGMGLPGFNNKKKSKLPKPSQPLKSFNWTKIPDVKLKGTIFSDLDENQIIPLLDFKRIDKAFSAYQKKEEY-EQRDLKDPEQDQEDGGSVLNFKPKELSFIDNRRAQNCQIMLKNVNQPNEVIREAVCTMDVEDRLTRDMVEQMLKFIPTPDEANLFNTHANESHQFAAGDSYLYEMSKIPHFEQRLKALYYQKGFSERVGDIKPKIECVIRACKQVSRSKRLKTLFEVILCFGNYMNKGSRANASGFKVSSLNKIIDTKSSSDKRVTLLHFIITVLEMKFPSVFQLEEELPDIRSAAKVNPAELTKELQLLRAGIVEIEKELQYQSTLKKKDRLPNDRFVETVGSFVKVANFSIQEVDEIYKEMEDRLVKTFSLFGEDPKSTAGEDFFGVFNGFLNSFAESKGEN---VQMQKQKEEEERKAKSLAQQREKERQRSAAKKLMSDNLSAEDKRKSLSERSPGEFDDLISALRTGDVFGDEMTMFSKQGRKRTGKQ 1085
            P K+  +G   +F CF    +D PEI Y   +     L TME   PMP + ELD  F+ +VDE DLT  HR+ MF LP EKKWQI CS  K Q E   AT   +FYID+L +     + L  ++ +EE R +T  ++ LKTALRT+P+ FV  F++ DGL  +++ L  MD+ET ES +HT+ IGC+KALMNN+ GR+ VLAH   IN+I QSL TEN+KTK AVLEILGA CLVPGGHKKVL AM HYQ+YA ERTRFQT+INDLD+STG +RDE S K AIMSFINA L  GAG + L+FR+HLRYE LMLG+QP++DKLR+ EN TL RHLDFF+M+RNEDE E  KR+ +  ID KSA+ M ++ ++++ H+ +Y H +SI+ H L +P   +   + YW ++DRIIQ+I +Q   G DPD  P+ + ++K+++  +  E+          K+  E AE MR    ++  KL+K+ RE +   +  +E++    K++++L  E     ++++ V ++ A + + ++ A  AS+   P          S       P     P P       PPP P              A  PPP AP        MGL      KK  +P+P+  LKSFNW+K+P+ KL+GT+++++D+ ++  +LD + +++ FSAYQ+++++    + K  E D  D       K KELS ID RRAQNC I+L  +   N+ I+ A+ TMD ++ L +DM+EQ+LKF+P   + +L   H +E  + A  D +L+EMS+I H++QRL++LY++K F+ERV ++KPK+E +    ++V RS  LK L EV+L FGNYMNKG R NA GFK+SSLNKI DTKSS DK +TLLH++IT++E K+PSV  L EEL DI  AAKVN  EL KE+  LR+G+  +E EL+YQ   K +   P D+FV  V  F+ VA+FS  +V+++  E +D   K    FGE+      ++FFG+F+ FL + +E+K EN    + ++++E   R    L +QRE+ER+   AK+               +    GEFDDL+SALR+G+VF  +++   K+ RKR   Q
Sbjct:    3 PRKRGGRGISFIFCCFRN--NDHPEITYRLRNDSNFALQTMEPALPMPPVEELDVMFSELVDELDLTDKHREAMFALPAEKKWQIYCSKKKDQEENKGATSWPEFYIDQLNSMAARKSLLALEKEEEEERSKT--IESLKTALRTKPMRFVTRFIDLDGLSCILNFLKTMDYETSESRIHTSLIGCIKALMNNSQGRAHVLAHSESINVIAQSLSTENIKTKVAVLEILGAVCLVPGGHKKVLQAMLHYQKYASERTRFQTLINDLDKSTGRYRDEVSLKTAIMSFINAVLSQGAGVESLDFRLHLRYEFLMLGIQPVIDKLREHENSTLDRHLDFFEMLRNEDELEFAKRFELVHIDTKSATQMFELTRKRLTHSEAYPHFMSILHHCLQMPYKRSGNTVQYWLLLDRIIQQIVIQNDKGQDPDSTPLENFNIKNVVRMLVNEN--------EVKQWKEQAEKMRKEHNELQQKLEKKERECDAKTQEKEEMMQTLNKMKEKLEKETTEHKQVKQQVADLTAQLHELSRRAVCASIPGGPSPGAPGGPFPSSVPGSLLPPPPPPPLPGGMLPPPPPPLPPGGPPPPPGPPPLGAIMPPPGAP--------MGLAL----KKKSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQ---KSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKE---------------NSEESGEFDDLVSALRSGEVFDKDLSKL-KRNRKRITNQ 1063

The following BLAST results are available for this feature:

BLAST of TCONS_00028703-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00028703-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DAAM1	0.000e+0	43.39	Disheveled-associated activator of morphogenesis 1...	[more]

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TCONS_00028703-protein (polypeptide) - C. hemisphaerica