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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028703 ID=TCONS_00028703|Name=TCONS_00028703|organism=Clytia hemisphaerica|type=transcript|length=4102bpRun BLAST on NCBI protein sequence of TCONS_00028703-protein >TCONS_00028703-protein ID=TCONS_00028703-protein|Name=TCONS_00028703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1113bp MPNKKKNKGGGGLFSCFGGGTDDQPEIRYEPDGGGGTLPTMENNEPMPDIRun BLAST on NCBI transcript from alignment at sc0000698:98380..130387+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028703 ID=TCONS_00028703|Name=TCONS_00028703|organism=Clytia hemisphaerica|type=transcript|length=32008bp|location=Sequence derived from alignment at sc0000698:98380..130387+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000698:98380..130387+ >TCONS_00028703 ID=TCONS_00028703|Name=TCONS_00028703|organism=Clytia hemisphaerica|type=CDS|length=96918bp|location=Sequence derived from alignment at sc0000698:98380..130387+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028703 vs. Swiss-Prot (Human)
Match: DAAM1 (Disheveled-associated activator of morphogenesis 1 OS=Homo sapiens GN=DAAM1 PE=1 SV=2) HSP 1 Score: 451.825 bits (1161), Expect = 3.516e-137 Identity = 243/522 (46.55%), Postives = 342/522 (65.52%), Query Frame = 1
Query: 607 DDQPEIRYE-PDGGGGTLPTMENNEPMPDINELDEKFAAVVDEFDLTAVHRKKMFELPPEKKWQIICSNSKGQHE--GSVATFDFYIDRLRAY----TTLYYQRTDEELRERTRFLQELKTALRTQPVSFVQGFLNGDGLQSLIDVLANMDWETCESTVHTACIGCLKALMNNTNGRSEVLAHPNCINIITQSLITENVKTKTAVLEILGACCLVPGGHKKVLDAMCHYQQYAEERTRFQTIINDLDRSTGLFRDEFSSKIAIMSFINAALRYGAGADHLEFRIHLRYELLMLGLQPIMDKLRKLENPTLGRHLDFFDMVRNEDEKELTKRYGVQQIDAKSASSMLDVLKQKIGHTPSYVHXXXXXXXXXXXPVD-AKKGLSYWRIIDRIIQEIALQQRDGTDPDMAPIDIHVKHIIEKMTTEDFKDDTVSKLAKRESEMAEMRSTVEKMADKLDXXXXXXXXXXXXCD-------ELINKAKKLEQQLNVEMVSRMKLEEVVKEVGASIPDDAKIANLASM 2127
+D PEI Y + L TME PMP + ELD F+ +VDE DLT HR+ MF LP EKKWQI CS K Q E G+ + +FYID+L + + L ++ +EE R +T ++ LKTALRT+P+ FV F++ DGL +++ L MD+ET ES +HT+ IGC+KALMNN+ GR+ VLAH IN+I QSL TEN+KTK AVLEILGA CLVPGGHKKVL AM HYQ+YA ERTRFQT+INDLD+STG +RDE S K AIMSFINA L GAG + L+FR+HLRYE LMLG+QP++DKLR+ EN TL RHLDFF+M+RNEDE E KR+ + ID KSA+ M ++ ++++ H+ +Y H +SI+ H L +P + + YW ++DRIIQ+I +Q G DPD P+ E+F V ++ E+E+ + + EKM + ++ ++ E+ ++ CD E++ K++++L E ++++ V ++ A + + ++ A AS+
Sbjct: 21 NDHPEITYRLRNDSNFALQTMEPALPMPPVEELDVMFSELVDELDLTDKHREAMFALPAEKKWQIYCSKKKDQEENKGATSWPEFYIDQLNSMAARKSLLALEKEEEEERSKT--IESLKTALRTKPMRFVTRFIDLDGLSCILNFLKTMDYETSESRIHTSLIGCIKALMNNSQGRAHVLAHSESINVIAQSLSTENIKTKVAVLEILGAVCLVPGGHKKVLQAMLHYQKYASERTRFQTLINDLDKSTGRYRDEVSLKTAIMSFINAVLSQGAGVESLDFRLHLRYEFLMLGIQPVIDKLREHENSTLDRHLDFFEMLRNEDELEFAKRFELVHIDTKSATQMFELTRKRLTHSEAYPHFMSILHHCLQMPYKRSGNTVQYWLLLDRIIQQIVIQNDKGQDPDSTPL-------------ENFNIKNVVRMLVNENEVKQWKEQAEKMRKEHNELQQKLEKKERECDAKTQEKEEMMQTLNKMKEKLEKETTEHKQVKQQVADLTAQLHELSRRAVCASI 527 HSP 2 Score: 385.185 bits (988), Expect = 3.076e-113 Identity = 202/470 (42.98%), Postives = 303/470 (64.47%), Query Frame = 1
Query: 2401 FNWTKIPDVKLKGTIFSDLDENQIIPLLDFKRIDKAFSAYQKKEEY-EQRDLKDPEQDQEDGGSVLNFKPKELSFIDNRRAQNCQIMLKNVNQPNEVIREAVCTMDVEDRLTRDMVEQMLKFIPTPDEANLFNTHANESHQFAAGDSYLYEMSKIPHFEQRLKALYYQKGFSERVGDIKPKIECVIRACKQVSRSKRLKTLFEVILCFGNYMNKGSRANASGFKVSSLNKIIDTKSSSDKRVTLLHFIITVLEMKFPSVFQLEEELPDIRSAAKVNPAELTKELQLLRAGIVEIEKELQYQSTLKKKDRLPNDRFVETVGSFVKVANFSIQEVDEIYKEMEDRLVKTFSLFGEDPKSTAGEDFFGVFNGFLNSFAESKGEN---VXXXXXXXXXXXXXXSLAQQREKERQRSAAKKLMSDNLSAEDKRKSLSERSPGEFDDLISALRTGDVFGDEMTMFSKQGRKRTGKQ 3798
FNW+K+P+ KL+GT+++++D+ ++ +LD + +++ FSAYQ+++++ + K E D D K KELS ID RRAQNC I+L + N+ I+ A+ TMD ++ L +DM+EQ+LKF+P + +L H +E + A D +L+EMS+I H++QRL++LY++K F+ERV ++KPK+E + ++V RS LK L EV+L FGNYMNKG R NA GFK+SSLNKI DTKSS DK +TLLH++IT++E K+PSV L EEL DI AAKVN EL KE+ LR+G+ +E EL+YQ K + P D+FV V F+ VA+FS +V+++ E +D K FGE+ ++FFG+F+ FL + +E+K EN + ++++E R L +QRE+ER+ AK+ + GEFDDL+SALR+G+VF +++ K+ RKR Q
Sbjct: 613 FNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQ---KSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKE---------------NSEESGEFDDLVSALRSGEVFDKDLSKL-KRNRKRITNQ 1063 The following BLAST results are available for this feature:
BLAST of TCONS_00028703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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