TCONS_00028710-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028710-protein
Unique NameTCONS_00028710-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028710-protein ID=TCONS_00028710-protein|Name=TCONS_00028710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
TIYSLIQSGKHATKRDIYYSNVNFFKTQRVVDEAISDISCMLCIPRHSLN
VLSSSKGFVGGNLSFKDAEENIVNCNVNEGVQVPCYVDGLNTLESNAKFV
LIIEKEAIYKRLLEEKINEKIGPCILITGKGFPDINTRMLIRKLWQGLHI
PILALVDADPHGIEIMCVHRFGSKALSHEASYLTCPVIRWLGVLPKDVNE
VNIKEDQLIKLSDNDRKKANDMIKRTYISSNPAILDQMKLMLEKGFKA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016286XLOC_016286Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028710TCONS_00028710Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002815Spo11/TopoVI_A
IPR013048Meiotic_Spo11
IPR011991WHTH_DNA-bd_dom
IPR013049Spo11/TopoVI_A_N
IPR034136TOPRIM_Topo6A/Spo11
Vocabulary: Biological Process
TermDefinition
GO:0000737DNA catabolic process, endonucleolytic
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000737 DNA catabolic process, endonucleolytic
biological_process GO:0006259 DNA metabolic process
cellular_component GO:0005694 chromosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002815Spo11/DNA topoisomerase VI subunit APRINTSPR01550TOP6AFAMILYcoord: 14..25
score: 50.52
coord: 100..117
score: 43.06
coord: 157..173
score: 59.56
coord: 125..146
score: 53.69
coord: 46..61
score: 49.61
coord: 28..45
score: 46.18
IPR002815Spo11/DNA topoisomerase VI subunit ASUPERFAMILY56726DNA topoisomerase IV, alpha subunitcoord: 2..248
IPR013048Meiotic recombination, Spo11PRINTSPR01551SPO11HOMOLOGcoord: 162..181
score: 55.0
coord: 20..40
score: 47.62
coord: 223..237
score: 27.62
coord: 197..221
score: 34.29
coord: 115..130
score: 42.86
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 1..54
e-value: 3.4E-21
score: 75.2
NoneNo IPR availableGENE3D3.40.1360.10coord: 55..248
e-value: 1.7E-61
score: 206.9
IPR013049Spo11/DNA topoisomerase VI, subunit A, N-terminalPFAMPF04406TP6A_Ncoord: 2..51
e-value: 2.1E-19
score: 69.1
IPR034136Topoisomerase 6 subunit A/Spo11, TOPRIM domainCDDcd00223TOPRIM_TopoIIB_SPOcoord: 98..248
e-value: 1.45557E-60
score: 189.388

Blast
[Close]
BLAST of TCONS_00028710-protein vs. Swiss-Prot (Human)
Match: SPO11 (Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 7.485e-89
Identity = 119/248 (47.98%), Postives = 174/248 (70.16%), Query Frame = 0 
Query:    2 IYSLIQSGKHATKRDIYYSNVNFFKTQRVVDEAISDISCMLCIPRHSLNVLSSSKGFVGGNLSFKDAEENIVNCNVNE-GVQVPCYVDGLNTLESNAKFVLIIEKEAIYKRLLEEKINEKIGPCILITGKGFPDINTRMLIRKLWQGLHIPILALVDADPHGIEIMCVHRFGSKALSHEASYLTCPVIRWLGVLPKDVNEVNIKEDQLIKLSDNDRKKANDMIKRTYISSNPAILDQMKLMLEKGFKA 248
            IY L+QS  +ATKRDIYY++   F  Q VVD  I+DISCML + R SL++LS+SKG + GNL + + +   VNC      V VP  + G+  L ++AKFVLI+EK+A ++RLL++    K+ PCI+ITGKG PD+NTR+L++KLW   H+P+  LVDADPHGIEIMC++++GS ++S EA +LT P IRWLG+LP D+  +N+ +D LI L+  D+ K + +++R Y++  P    +M++M +   KA
Sbjct:  121 IYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLKVSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAKFVLIVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPHGIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDSILRRPYVTCQPFWRKEMEIMADSKMKA 368
The following BLAST results are available for this feature:
BLAST of TCONS_00028710-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPO117.485e-8947.98Meiotic recombination protein SPO11 OS=Homo sapien... [more]
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