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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028710 ID=TCONS_00028710|Name=TCONS_00028710|organism=Clytia hemisphaerica|type=transcript|length=746bp
NACGATTTACTCTTTGATTCAAAGTGGAAAACATGCTACTAAACGGGATA
TTTATTATTCcaatgtcaatttttttaaaacccaACGTGTGGTTGATGAA
GCAATCTCTGATATTTCATGTATGTTGTGCATTCCGAGACATTCTCTCAA
TGTTTTATCCTCTTCAAAAGGTTTTGTTGGGggaaatttatcatttaaag
aTGCAGAAGAAAATATAGTTAATTGTAATGTCAATGAAGGAGTGCAAGTA
CCATGTTATGTTGATGGACTGAATACTTTGGAATCAAATGCCAAATTTGT
ACTCATTATTGAAAAGGAAGCAATTTATAAGAGGCTATTGGAGGAGAAGA
TAAATGAAAAGATTGGACCTTGTATTCTTATAACAGGAAAAGGATTTCCA
GACATCAATACACGAATGCTGATTCGAAAATTATGGCAAGGACTTCACAT
TCCTATTCTGGCTTTGGTGGATGCAGATCCACATGGGATTGAAATCATGT
GTGTTCACAGATTTGGTTCAAAAGCACTCTCTCACGAAGCTTCTTATCTA
ACTTGTCCTGTGATACGTTGGTTAGGAGTTTTACCTAAAGATGTGAACGA
GGTAAATATCAAAGAGGATCAGTTAATCAAACTGAGTGATAATGATCGAA
AGAAAGCTAACGATATGATCAAGAGAACTTACATCAGTAGTAATCCTGCT
ATATTAGACCAAATGAAGTTGATGCTCGAAAAAGGATTTAAAGCAG Run BLAST on NCBI protein sequence of TCONS_00028710-protein >TCONS_00028710-protein ID=TCONS_00028710-protein|Name=TCONS_00028710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
TIYSLIQSGKHATKRDIYYSNVNFFKTQRVVDEAISDISCMLCIPRHSLN
VLSSSKGFVGGNLSFKDAEENIVNCNVNEGVQVPCYVDGLNTLESNAKFV
LIIEKEAIYKRLLEEKINEKIGPCILITGKGFPDINTRMLIRKLWQGLHI
PILALVDADPHGIEIMCVHRFGSKALSHEASYLTCPVIRWLGVLPKDVNE
VNIKEDQLIKLSDNDRKKANDMIKRTYISSNPAILDQMKLMLEKGFKA Run BLAST on NCBI transcript from alignment at sc0000698:38309..39336- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028710 ID=TCONS_00028710|Name=TCONS_00028710|organism=Clytia hemisphaerica|type=transcript|length=1028bp|location=Sequence derived from alignment at sc0000698:38309..39336- (Clytia hemisphaerica)
NACGATTTACTCTTTGATTCAAAGTGGAAAACATGCTACTAAACGGGATA
TTTATTATTCCAATGTCAATTTTTTTAAAACCCAACGTGTGGTTGATGAA
GCAATCTCTGATATTTCATGTATGTTGTGCATTCCGAGACATTCTCTCAA
TGTTTTATCCTCTTCAAAAGGTTTTGTTGGGGGAAATTTATCATTTAAAG
ATGCAGAAGAAAATATAGTTAATTGTAATGTCAATGAAGGAGTGCAAGTA
CCATGTTATGTTGATGGACTGAATACTTTGGAATCAAATGCCAAATTTGT
ACTCATTATTGAAAAGGAAGCAATTTATAAGAGGCTATTGGAGGAGAAGA
TAAATGAAAAGATTGGACCTTGTATTCTTATAACAGGTACTGATGGCATA
AGAACTTGCGCCTCAATTTTAGTTACAATTGAATATGATAAAAATTCAAG
ATTTTAAGCCTTTTTATGTGAAAAGGTTAAGCCTACAGTACTACGAAAAT
TACGAAAAAATAAAAAGAGCTCTACGAGAATTCATCTGTTTTACAGAAGA
TTTATGTTGTTTTTGTGTATAGGTCAAAGATTCAATTCACTGATTACAAT
CTATAAACAAGATAACAAGATAGGATTTATAAGCTCGCAGGCTGAAGTGT
GTTTATGTTATTTTTCAGGAAAAGGATTTCCAGACATCAATACACGAATG
CTGATTCGAAAATTATGGCAAGGACTTCACATTCCTATTCTGGCTTTGGT
GGATGCAGATCCACATGGGATTGAAATCATGTGTGTTCACAGATTTGGTT
CAAAAGCACTCTCTCACGAAGCTTCTTATCTAACTTGTCCTGTGATACGT
TGGTTAGGAGTTTTACCTAAAGATGTGAACGAGGTAAATATCAAAGAGGA
TCAGTTAATCAAACTGAGTGATAATGATCGAAAGAAAGCTAACGATATGA
TCAAGAGAACTTACATCAGTAGTAATCCTGCTATATTAGACCAAATGAAG
TTGATGCTCGAAAAAGGATTTAAAGCAG Coding sequence (CDS) from alignment at sc0000698:38309..39336- >TCONS_00028710 ID=TCONS_00028710|Name=TCONS_00028710|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at sc0000698:38309..39336- (Clytia hemisphaerica)
GAAAAGGATTTCCAGACATCAATACACGAATGCTGATTCGAAAATTATGG
CAAGGACTTCACATTCCTATTCTGGCTTTGGTGGATGCAGATCCACATGG
GATTGAAATCATGTGTGTTCACAGATTTGGTTCAAAAGCACTCTCTCACG
AAGCTTCTTATCTAACTTGTCCTGTGATACGTTGGTTAGGAGTTTTACCT
AAAGATGTGAACGAGGTAAATATCAAAGAGGATCAGTTAATCAAACTGAG
TGATAATGATCGAAAGAAAGCTAACGATATGATCAAGAGAACTTACATCA
GTAGTAATCCTGCTATATTAGACCAAATGAAGTTGATGCTCGAAAAAGGA
TTTAAAGCAACGATTTACTCTTTGATTCAAAGTGGAAAACATGCTACTAA
ACGGGATATTTATTATTCCAATGTCAATTTTTTTAAAACCCAACGTGTGG
TTGATGAAGCAATCTCTGATATTTCATGTATGTTGTGCATTCCGAGACAT
TCTCTCAATGTTTTATCCTCTTCAAAAGGTTTTGTTGGGGGAAATTTATC
ATTTAAAGATGCAGAAGAAAATATAGTTAATTGTAATGTCAATGAAGGAG
TGCAAGTACCATGTTATGTTGATGGACTGAATACTTTGGAATCAAATGCC
AAATTTGTACTCATTATTGAAAAGGAAGCAATTTATAAGAGGCTATTGGA
GGAGAAGATAAATGAAAAGATTGGACCTTGTATTCTTATAACAGGAAAAG
GATTTCCAGACATCAATACACGAATGCTGATTCGAAAATTATGGCAAGGA
CTTCACATTCCTATTCTGGCTTTGGTGGATGCAGATCCACATGGGATTGA
AATCATGTGTGTTCACAGATTTGGTTCAAAAGCACTCTCTCACGAAGCTT
CTTATCTAACTTGTCCTGTGATACGTTGGTTAGGAGTTTTACCTAAAGAT
GTGAACGAGGTAAATATCAAAGAGGATCAGTTAATCAAACTGAGTGATAA
TGATCGAAAGAAAGCTAACGATATGATCAAGAGAACTTACATCAGTAGTA
ATCCTGCTATATTAGACCAAATGAAGTTGATGCTCGAAAAAGGATTTAAA
GCAACGATTTACTCTTTGATTCAAAGTGGAAAACATGCTACTAAACGGGA
TATTTATTATTCCAATGTCAATTTTTTTAAAACCCAACGTGTGGTTGATG
AAGCAATCTCTGATATTTCATGTATGTTGTGCATTCCGAGACATTCTCTC
AATGTTTTATCCTCTTCAAAAGGTTTTGTTGGGGGAAATTTATCATTTAA
AGATGCAGAAGAAAATATAGTTAATTGTAATGTCAATGAAGGAGTGCAAG
TACCATGTTATGTTGATGGACTGAATACTTTGGAATCAAATGCCAAATTT
GTACTCATTATTGAAAAGGAAGCAATTTATAAGAGGCTATTGGAGGAGAA
GATAAATGAAAAGATTGGACCTTGTATTCTTATAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028710-exon-sc0000698-1575043694:38951..39336 | TCONS_00028710-exon-sc0000698-1575043694:38951..39336 | Clytia hemisphaerica | exon |
| TCONS_00028710-exon-sc0000698-1575043694:38309..38668 | TCONS_00028710-exon-sc0000698-1575043694:38309..38668 | Clytia hemisphaerica | exon |
| TCONS_00028710-exon-sc0000698-1510915933:38951..39336 | TCONS_00028710-exon-sc0000698-1510915933:38951..39336 | Clytia hemisphaerica | exon |
| TCONS_00028710-exon-sc0000698-1510915933:38309..38668 | TCONS_00028710-exon-sc0000698-1510915933:38309..38668 | Clytia hemisphaerica | exon |
| TCONS_00028710-exon-sc0000698-1491911889:38951..39336 | TCONS_00028710-exon-sc0000698-1491911889:38951..39336 | Clytia hemisphaerica | exon |
| TCONS_00028710-exon-sc0000698-1491911889:38309..38668 | TCONS_00028710-exon-sc0000698-1491911889:38309..38668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000698 | supercontig | sc0000698:38309..39336 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000737 | DNA catabolic process, endonucleolytic |
| GO:0006259 | DNA metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003824 | catalytic activity |
| GO:0005524 | ATP binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005694 | chromosome |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000737 |
DNA catabolic process, endonucleolytic |
| biological_process |
GO:0006259 |
DNA metabolic process |
| cellular_component |
GO:0005694 |
chromosome |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
BLAST of TCONS_00028710 vs. Swiss-Prot (Human)
Match: SPO11 (Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 2.671e-87 Identity = 119/248 (47.98%), Postives = 174/248 (70.16%), Query Frame = 2
Query: 5 IYSLIQSGKHATKRDIYYSNVNFFKTQRVVDEAISDISCMLCIPRHSLNVLSSSKGFVGGNLSFKDAEENIVNCNVNE-GVQVPCYVDGLNTLESNAKFVLIIEKEAIYKRLLEEKINEKIGPCILITGKGFPDINTRMLIRKLWQGLHIPILALVDADPHGIEIMCVHRFGSKALSHEASYLTCPVIRWLGVLPKDVNEVNIKEDQLIKLSDNDRKKANDMIKRTYISSNPAILDQMKLMLEKGFKA 745
IY L+QS +ATKRDIYY++ F Q VVD I+DISCML + R SL++LS+SKG + GNL + + + VNC V VP + G+ L ++AKFVLI+EK+A ++RLL++ K+ PCI+ITGKG PD+NTR+L++KLW H+P+ LVDADPHGIEIMC++++GS ++S EA +LT P IRWLG+LP D+ +N+ +D LI L+ D+ K + +++R Y++ P +M++M + KA
Sbjct: 121 IYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLKVSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAKFVLIVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPHGIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDSILRRPYVTCQPFWRKEMEIMADSKMKA 368
The following BLAST results are available for this feature:
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