TCONS_00029089-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00029089-protein
Unique NameTCONS_00029089-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00029089-protein ID=TCONS_00029089-protein|Name=TCONS_00029089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MLQRLLVFPKHSILRHGTCTFMYSTKTGSHKKSLKDGPDLHEFIENEDLV
RQPRGKRLRLPPWLKTEIPSGENYAKLKKTLRSLNLATVCEEAKCPNIGE
CWGGKEGTATATIMILGDTCTRGCRFCSVKTARRPPPPDPNEPVNTAKAI
ASWNLNYIVITSVDRDDLPDGGAGHFAEVVKQVKFHNPDLLVECLTPDFA
GNFDHVSQVAQSGLDVFAHNIETVESLTWFVRDPRATYKQSMNVLKHVKD
AHPNILTKSSIMVGFGETNEEVIKTMEDLRNAGVDCLTIGQYMQPTKGHA
KVKEFVHPSRFEEWEEIGNKLGFAYTASGPLVRSSYKAGEFFIENLLKNR
KN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016545XLOC_016545Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00029089TCONS_00029089Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006638Elp3/MiaB/NifB
IPR003698Lipoyl_synth
IPR031691LIAS_N
IPR007197rSAM
IPR023404rSAM_horseshoe
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0003824catalytic activity
GO:0016992lipoate synthase activity
GO:00515394 iron, 4 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0009107lipoate biosynthetic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009107 lipoate biosynthetic process
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0016992 lipoate synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006638Elongator protein 3/MiaB/NifBSMARTSM00729MiaBcoord: 110..319
e-value: 1.7E-17
score: 74.1
IPR003698Lipoyl synthasePIRSFPIRSF005963Lipoyl_synthcoord: 10..352
e-value: 3.9E-143
score: 474.7
IPR003698Lipoyl synthaseTIGRFAMTIGR00510TIGR00510coord: 50..349
e-value: 2.4E-128
score: 425.6
IPR003698Lipoyl synthaseSFLDSFLDG01058lipoyl_synthase_likecoord: 53..345
e-value: 0.0
score: 461.6
IPR003698Lipoyl synthaseHAMAPMF_00206Lipoyl_synthcoord: 59..350
score: 135.707
IPR031691Lipoyl synthase, N-terminalPFAMPF16881LIAS_Ncoord: 19..95
e-value: 1.1E-24
score: 86.8
IPR007197Radical SAMPFAMPF04055Radical_SAMcoord: 117..279
e-value: 1.2E-13
score: 51.6
IPR023404Radical SAM, alpha/beta horseshoeGENE3D3.80.30.20coord: 108..319
e-value: 1.6E-23
score: 83.3
NoneNo IPR availableSFLDSFLDF00271lipoyl_synthasecoord: 53..345
e-value: 0.0
score: 461.6
NoneNo IPR availableCDDcd01335Radical_SAMcoord: 114..317
e-value: 4.24209E-9
score: 53.4913
NoneNo IPR availableSUPERFAMILY102114Radical SAM enzymescoord: 71..349

Blast
[Close]
BLAST of TCONS_00029089-protein vs. Swiss-Prot (Human)
Match: LIAS (Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=1 SV=3)

HSP 1 Score: 448.358 bits (1152), Expect = 2.167e-158
Identity = 211/334 (63.17%), Postives = 262/334 (78.44%), Query Frame = 0 
Query:   31 KKSLKDGPDLHEFIENE------------DLVRQPRGKRLRLPPWLKTEIPSGENYAKLKKTLRSLNLATVCEEAKCPNIGECWGGKE-GTATATIMILGDTCTRGCRFCSVKTARRPPPPDPNEPVNTAKAIASWNLNYIVITSVDRDDLPDGGAGHFAEVVKQVKFHNPDLLVECLTPDFAGNFDHVSQVAQSGLDVFAHNIETVESLTWFVRDPRATYKQSMNVLKHVKDAHPNILTKSSIMVGFGETNEEVIKTMEDLRNAGVDCLTIGQYMQPTKGHAKVKEFVHPSRFEEWEEIGNKLGFAYTASGPLVRSSYKAGEFFIENLLKNRK 351
            K+ L++GPDL +F+  +            +L RQ +G+RLRLPPWLKTEIP G+NY KLK TLR+LNL TVCEEA+CPNIGECWGG E  TATATIM++GDTCTRGCRFCSVKTAR PPP D +EP NTAKAIA W L+Y+V+TSVDRDD+PDGGA H A+ V  +K  NP +LVECLTPDF G+   + +VA SGLDV+AHN+ETV  L   VRDPRA + QS+ VLKH K   P++++K+SIM+G GE +E+V  TM+ LR A VDCLT+GQYMQPT+ H KV+E++ P +F+ WE++GN+LGF YTASGPLVRSSYKAGEFF++NL+  RK
Sbjct:   36 KELLQNGPDLQDFVSGDLADRSTWDEYKGNLKRQ-KGERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQSKVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTRRHLKVEEYITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLKNLVAKRK 368
The following BLAST results are available for this feature:
BLAST of TCONS_00029089-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIAS2.167e-15863.17Lipoyl synthase, mitochondrial OS=Homo sapiens GN=... [more]
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