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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029089 ID=TCONS_00029089|Name=TCONS_00029089|organism=Clytia hemisphaerica|type=transcript|length=4307bp
tggcactttgttgacaatctaactctcgcatcaaattcctgctttcttca
gtaaattgaagatgagaaaaaacctaagtcacggatcacagattgaaaca
aatatatgaagagtgggattttacagccgcccatCGTGCAAGACACTGAG
AGGCcacaggtgccaaaaagaagggtcgTTTGAAATGCgacaacctcatt
ggtggaaatttgataaacagctgcgaaagagcgctgggaagcaatcactt
agaagagaccactttcgtttttgttccagatttcgatataaactttTCTC
AGGGATTTACTTGTTAATGTACAtttacacatgtgttgtgtcaacttacc
agcattgtattgttgtaaagaaaagataaaagaggtaagactagcctagt
ttctaatcctgatataggagtttaagcttagactgGCATAGCCCTCACAT
TCATTTGAGTCTAAGTTGTTAAGTCAGTCTAAgctgactggtcattaaaa
tataaagttaatcaaaacaaaaattgtagagtagagctgcgagcaaagct
gcgtagttcatttgttttgagattttgctgctttaattggtcagtcattt
gatggctatgcaagtttccctcgatgcaagttacccgacttcacggtact
gctttcagtttgcgtgttttgaaagtttgatgtgtgtactccatcttagt
ggaattttttaatggcattaAACCGGATTCagtatgctatgtctttaaga
acaaatttctaaaagggttttgttgttctgtaaatatttctttttggatt
aataaattccatcttttattgttctaaggcgagaccaatttaatttgttg
ttttacgggcccgaccgaccctatttttgctaaaatcaaaaaaataataa
tattaaatTTCCaccacaatatattttacacacttatttgtaagaatcaa
tttgaataaagctgaaaattaattcaagaaattgaaaaatttagaaaatc
aagcattccatacactaagattttattatgatcttcatcgaagattaaaa
aaaagtgaattttagattcatatattttttagaaaacattttcggtactt
taccaaccctgataaatgaaaaatttattcttattttaccgaccgaccga
cccatattttgctaacaatctgtccgtagaacaacaaattaaattggtct
cgcctaatgattataaaatttctttataagatgcattgttgtctttttaa
tctttgtgtaaatttgcaaatgttttgcatattttccaactaaatccaac
cacggctttttcattcctgtatttttgcatacaattcaagatggcagatg
GAAAGACAAAAGGTCACTGTTCAATCACGATTCAATTATTATAGTTTGAT
AGATTCGATTGTAGTTTGACAGTCATTCAATAAGAGTATCGTTTTTTTCT
AGGCCAATTTTGCAATATCTTTGCTAGTATACCTGAGAAAAATAGTGGAA
TGGTTCCGGAAAGCACCAAGATACTACTCGTACACTCGTCGAACAACTTG
AACACACATCGAATAAATTGAAACTGTATTTTTAATCAAGTTAATTGAAC
TAATCAAGATATTATTGCGTGCGGCTAAGTTTCATTACTAAGATTCAGTT
TCATGGTTCGAAGAAGAAAATCAGTTTGATAGGGTTTGGTTGACATCCCC
TGGTTGTCTGTGTAAACAAAACTTTACATTTGATCATGCATTATTTTGCA
CATGCCAGGCTTTTATGTTATGTCATTTTAAAGCTACATAAACAATACTC
TATATTTTGCACGTCAAAAAATAACAGATCATAAAGAAAGTAAAGAACAG
CTGGCTGTTCTCTGGGAAATAACAATGGGTCCAAAGGAACAGCCGTGTGG
TGCTGTGGGActgaaaaggttaagaacattttaaggcttgtgGACAAAAA
TATATTCTactcagttaaaaaaaaacatgttaaagaacatttttagactt
aaactcaaaaagttgattaatcaagaattttggatgttcttataatattt
GATTGGTATATAATGTTATGGAATCATTActaaaaacaaaggaaaggcAA
AAATGTGATACCTTCCTCTTTGTGGCTTCTGTTTTCATAGCTCATCCAAC
TCATGGAGTCTGATGCCTTGATACTTCTTTGAGGCTGTTAGAGTCAGTCA
AGCAGTGGTGTGCGGAACAGTTACTAGTTAGGTGATTTTTGAAGACTTCT
TTGGGGCATTTTGTCAAATCTCTTATTGGTCTGGGAAAGGTATTGAGCAA
GTGAGGGTCCTCTTGGAAAAGACTTCATTTCCAGATATTCTTGTTTTTGA
TGTTGACAGCATATATTGGATTGCTATTTGCGATGTCATGTCCAggcaat
ctcaatcgaacagaacCAATGATAGAACCAGCCAACTGAATGGAAGCTTT
CcatgttttttaaatttaattttgatcaTTAACAGAGTTCTTTTTTAgct
aatttaaatttaaatcatGCTTCAAAGATTGTTGGTTTTTCCAAAACATT
CAATATTGCGACATGGGACTTGTACATTTATGTACTCAACTAAAACAGGA
AGTCATAAAAAGTCTCTAAAAGATGGACCTGATCTACATGAATTCATCGA
AAATGAGGATTTAGTGCGCCAACCTAGAGGCAAACGATTACGTCTTCCGC
CTTGGTTGAAAACTGAAATCCCGTCAGGTGAAAATTATGCAAAGTTGAAA
AAGACATTACGCTCTTTAAATCTTGCTACAGTGTGTGAGGAGGCTAAATG
CCCAAATATTGGCGAGTGCTGGGGTGGCAAAGAGGGGACTGCTACAGCTA
CAATCATGATTTTAGGGGACACTTGTACCCGTGGATGTCGTTTCTGTTCT
GTTAAAACTGCCAGGCGTCCACCACCTCCAGATCCAAATGAGCCTGTGAA
TACAGCCAAAGCAATTGCTAGTTGGAATTTGAATTATATTGTTATCACGT
CGGTTGATCGAGATGATCTCCCTGATGGAGGTGCAGGTCACTTTGCTGAA
GTTGTCAAACAAGTTAAATTTCATAACCCAGACCTTCTGGTTGAATGCCT
TACACCCGACTTCGCAGGAAATTTTGACCATGTATCACAAGTAGCACAGT
CTGGTTTGGATGTTTTCGCCCATAATATTGAAACTGTTGAAAGTTTGACC
TGGTTTGTGAGGGACCCAAGAGCTACTTATAAACAAAGTATGAATGTATT
GAAGCATGTGAAAGATGCGCACCCTAATATCTTAACCAAATCAAGCATTA
TGGTTGGTTTTGGTGAAACCAATGAAGAGGTTATCAAAACCATGGAAGAT
TTACGCAATGCTGGAGTTGATTGCCTCACAATAGGGCAATATATGCAACC
AACCAAAGGCCATGCAAAGGTCAAAGAGTTTGTTCACCCAAGTCGTTTTG
AAGAATGGGAAGAAATTGGAAACAAACTAGGATTCGCGTATACAGCGAGC
GGACCACTCGTGCGCTCATCTTATAAAGCAGGAGAGTTTTTCATTGAAAA
CCtattgaaaaatcgaaaaaattgaagattgaaTACACACATTAAAGGTG
GTATTAATATTAATATGGTAtgtatcaaaaagaaaatgatatttATTTAA
GGTGTTTTGCTCTGTAGAATTGTAAATAAATAacgattttttttactttt
atgcTTTGTTTTcatattaaagtctgtctcaaaatgaTCTGCAAAAAAAA
TGATCTCAAAATGATCTGCAGAAGCAAAAAGTTCGAAATAGGAAAAGATG
TTTATAGTTGGAATGATATAAAAATAGTAAGACTAAAAAATATCTACAGA
CAAAGATGAAAAATccggaaaaatgaaaaatgaactgCTTGAAGAACTGT
ACCAATCTTTATTTTGTTGCCATTTTTTAATCTAATATTTGATGGGTCGA
TTTCTACTTTTTGAGCCTTGTCTGATAAGCATTATTTTACGAGTCACTTT
ACTCAATTTAATAAATCACCCATTAAAATTTAAGtttcttctttgttttg
taAGAGTTAAACTTTGCCTGATGTATCTAGAATAGAAGGAGTGAgtgaaa
agaattttcaataagttatggaaataaataaattctgaTAAATTATTGTA
TATTAACTCTTTTTTTCGCGTTATTCAAGAAAAGGTATTTTAACCCTCAA
TTTGTTTTTGGGGGGAGCGGCCATGTGTTGCCTAcctttccttttgattt
tttttggtaaGGTTTTTTAATATGGTgccaatgtttttaaaatttcctaC
TTCGCCT Run BLAST on NCBI protein sequence of TCONS_00029089-protein >TCONS_00029089-protein ID=TCONS_00029089-protein|Name=TCONS_00029089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MLQRLLVFPKHSILRHGTCTFMYSTKTGSHKKSLKDGPDLHEFIENEDLV
RQPRGKRLRLPPWLKTEIPSGENYAKLKKTLRSLNLATVCEEAKCPNIGE
CWGGKEGTATATIMILGDTCTRGCRFCSVKTARRPPPPDPNEPVNTAKAI
ASWNLNYIVITSVDRDDLPDGGAGHFAEVVKQVKFHNPDLLVECLTPDFA
GNFDHVSQVAQSGLDVFAHNIETVESLTWFVRDPRATYKQSMNVLKHVKD
AHPNILTKSSIMVGFGETNEEVIKTMEDLRNAGVDCLTIGQYMQPTKGHA
KVKEFVHPSRFEEWEEIGNKLGFAYTASGPLVRSSYKAGEFFIENLLKNR
KN Run BLAST on NCBI transcript from alignment at sc0000724:126125..130948+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029089 ID=TCONS_00029089|Name=TCONS_00029089|organism=Clytia hemisphaerica|type=transcript|length=4824bp|location=Sequence derived from alignment at sc0000724:126125..130948+ (Clytia hemisphaerica)
tggcactttgttgacaatctaactctcgcatcaaattcctgctttcttca
gtaaattgaagatgagaaaaaacctaagtcacggatcacagattgaaaca
aatatatgaagagtgggattttacagccgcccatCGTGCAAGACACTGAG
AGGCcacaggtgccaaaaagaagggtcgTTTGAAATGCgacaacctcatt
ggtggaaatttgataaacagctgcgaaagagcgctgggaagcaatcactt
agaagagaccactttcgtttttgttccagatttcgatataaactttTCTC
AGGGATTTACTTGTTAATGTACAtttacacatgtgttgtgtcaacttacc
agcattgtattgttgtaaagaaaagataaaagaggtaagactagcctagt
ttctaatcctgatataggagtttaagcttagactgGCATAGCCCTCACAT
TCATTTGAGTCTAAGTTGTTAAGTCAGTCTAAgctgactggtcattaaaa
tataaagttaatcaaaacaaaaattgtagagtagagctgcgagcaaagct
gcgtagttcatttgttttgagattttgctgctttaattggtcagtcattt
gatggctatgcaagtttccctcgatgcaagttacccgacttcacggtact
gctttcagtttgcgtgttttgaaagtttgatgtgtgtactccatcttagt
ggaattttttaatggcattaAACCGGATTCagtatgctatgtctttaaga
acaaatttctaaaagggttttgttgttctgtaaatatttctttttggatt
aataaattccatcttttattgttctaaggcgagaccaatttaatttgttg
ttttacgggcccgaccgaccctatttttgctaaaatcaaaaaaataataa
tattaaatTTCCaccacaatatattttacacacttatttgtaagaatcaa
tttgaataaagctgaaaattaattcaagaaattgaaaaatttagaaaatc
aagcattccatacactaagattttattatgatcttcatcgaagattaaaa
aaaagtgaattttagattcatatattttttagaaaacattttcggtactt
taccaaccctgataaatgaaaaatttattcttattttaccgaccgaccga
cccatattttgctaacaatctgtccgtagaacaacaaattaaattggtct
cgcctaatgattataaaatttctttataagatgcattgttgtctttttaa
tctttgtgtaaatttgcaaatgttttgcatattttccaactaaatccaac
cacggctttttcattcctgtatttttgcatacaattcaagatggcagatg
GAAAGACAAAAGGTCACTGTTCAATCACGATTCAATTATTATAGTTTGAT
AGATTCGATTGTAGTTTGACAGTCATTCAATAAGAGTATCGTTTTTTTCT
AGGCCAATTTTGCAATATCTTTGCTAGTATACCTGAGAAAAATAGTGGAA
TGGTTCCGGAAAGCACCAAGATACTACTCGTACACTCGTCGAACAACTTG
AACACACATCGAATAAATTGAAACTGTATTTTTAATCAAGTTAATTGAAC
TAATCAAGATATTATTGCGTGCGGCTAAGTTTCATTACTAAGATTCAGTT
TCATGGTTCGAAGAAGAAAATCAGTTTGATAGGGTTTGGTTGACATCCCC
TGGTTGTCTGTGTAAACAAAACTTTACATTTGATCATGCATTATTTTGCA
CATGCCAGGCTTTTATGTTATGTCATTTTAAAGCTACATAAACAATACTC
TATATTTTGCACGTCAAAAAATAACAGATCATAAAGAAAGTAAAGAACAG
CTGGCTGTTCTCTGGGAAATAACAATGGGTCCAAAGGAACAGCCGTGTGG
TGCTGTGGGActgaaaaggttaagaacattttaaggcttgtgGACAAAAA
TATATTCTactcagttaaaaaaaaacatgttaaagaacatttttagactt
aaactcaaaaagttgattaatcaagaattttggatgttcttataatattt
GATTGGTATATAATGTTATGGAATCATTActaaaaacaaaggaaaggcAA
AAATGTGATACCTTCCTCTTTGTGGCTTCTGTTTTCATAGCTCATCCAAC
TCATGGAGTCTGATGCCTTGATACTTCTTTGAGGCTGTTAGAGTCAGTCA
AGCAGTGGTGTGCGGAACAGTTACTAGTTAGGTGATTTTTGAAGACTTCT
TTGGGGCATTTTGTCAAATCTCTTATTGGTCTGGGAAAGGTATTGAGCAA
GTGAGGGTCCTCTTGGAAAAGACTTCATTTCCAGATATTCTTGTTTTTGA
TGTTGACAGCATATATTGGATTGCTATTTGCGATGTCATGTCCAggcaat
ctcaatcgaacagaacCAATGATAGAACCAGCCAACTGAATGGAAGCTTT
CcatgttttttaaatttaattttgatcaTTAACAGAGTTCTTTTTTAgct
aatttaaatttaaatcatGCTTCAAAGATTGTTGGTTTTTCCAAAACATT
CAATATTGCGACATGGGACTTGTACATTTATGTACTCAACTAAAACAGGA
AGTCATAAAAAGTCTCTAAAAGATGGACCTGATCTACATGAATTCATCGA
AAATGAGGATTTAGTGCGCCAACCTAGAGGCAAACGATTACGTCTTCCGC
CTTGGTTGAAAACTGAAATCCCGTCAGGTGAAAATTATGCAAAGTTGAAA
AAGACATTACGCTCTTTAAATCTTGCTACAGTGTGTGAGGAGGCTAAATG
CCCAAATATTGGCGAGTGCTGGGGTGGCAAAGAGGGGACTGCTACAGCTA
CAATCATGATTTTAGGTATGATATTTGTATAATGTATGTGTTCAGACAGG
ACTTCgccatttattttttctatttatcaATGACAAACAGTAATAATATT
GACATTTATGTGTTGCTTGCTCTGGTAAAGTAAAATTTCTCATTGTCCAC
TGGGACCCTTTCCCACTGGAGAAATTGGAAAGAATATTGTCTCTGGTGGA
AATTTATCCTCCATTAAATCAATCCTCAAtgtaaaatattatgctatttt
tcccatcttggctgaattttctgacttgaaaaaaattggattgaaatccc
cagccataaaaaatatggtaaTATCATCAATTCCCATCAAGTTTcaatcc
gttatttttatccccaaaaAAATCCGACCAGGTCTATAAGAAGGAGGTGT
taagattaaatttttttttaaatcttcacaTTTATCATTATAAACTTATG
ATTGAAAGAGGTGgttgaaaaattcacttttttattctaACAATATTTTA
GTCCTTTGAAAAGACAACTTCTTTTCTTTTAGGGGACACTTGTACCCGTG
GATGTCGTTTCTGTTCTGTTAAAACTGCCAGGCGTCCACCACCTCCAGAT
CCAAATGAGCCTGTGAATACAGCCAAAGCAATTGCTAGTTGGAATTTGAA
TTATATTGTTATCACGTCGGTTGATCGAGATGATCTCCCTGATGGAGGTG
CAGGTCACTTTGCTGAAGTTGTCAAACAAGTTAAATTTCATAACCCAGAC
CTTCTGGTTGAATGCCTTACACCCGACTTCGCAGGAAATTTTGACCATGT
ATCACAAGTAGCACAGTCTGGTTTGGATGTTTTCGCCCATAATATTGAAA
CTGTTGAAAGTTTGACCTGGTTTGTGAGGGACCCAAGAGCTACTTATAAA
CAAAGTATGAATGTATTGAAGCATGTGAAAGATGCGCACCCTAATATCTT
AACCAAATCAAGCATTATGGTTGGTTTTGGTGAAACCAATGAAGAGGTTA
TCAAAACCATGGAAGATTTACGCAATGCTGGAGTTGATTGCCTCACAATA
GGGCAATATATGCAACCAACCAAAGGCCATGCAAAGGTCAAAGAGTTTGT
TCACCCAAGTCGTTTTGAAGAATGGGAAGAAATTGGAAACAAACTAGGAT
TCGCGTATACAGCGAGCGGACCACTCGTGCGCTCATCTTATAAAGCAGGA
GAGTTTTTCATTGAAAACCtattgaaaaatcgaaaaaattgaagattgaa
TACACACATTAAAGGTGGTATTAATATTAATATGGTAtgtatcaaaaaga
aaatgatatttATTTAAGGTGTTTTGCTCTGTAGAATTGTAAATAAATAa
cgattttttttacttttatgcTTTGTTTTcatattaaagtctgtctcaaa
atgaTCTGCAAAAAAAATGATCTCAAAATGATCTGCAGAAGCAAAAAGTT
CGAAATAGGAAAAGATGTTTATAGTTGGAATGATATAAAAATAGTAAGAC
TAAAAAATATCTACAGACAAAGATGAAAAATccggaaaaatgaaaaatga
actgCTTGAAGAACTGTACCAATCTTTATTTTGTTGCCATTTTTTAATCT
AATATTTGATGGGTCGATTTCTACTTTTTGAGCCTTGTCTGATAAGCATT
ATTTTACGAGTCACTTTACTCAATTTAATAAATCACCCATTAAAATTTAA
GtttcttctttgttttgtaAGAGTTAAACTTTGCCTGATGTATCTAGAAT
AGAAGGAGTGAgtgaaaagaattttcaataagttatggaaataaataaat
tctgaTAAATTATTGTATATTAACTCTTTTTTTCGCGTTATTCAAGAAAA
GGTATTTTAACCCTCAATTTGTTTTTGGGGGGAGCGGCCATGTGTTGCCT
AcctttccttttgattttttttggtaaGGTTTTTTAATATGGTgccaatg
tttttaaaatttcctaCTTCGCCT Coding sequence (CDS) from alignment at sc0000724:126125..130948+ >TCONS_00029089 ID=TCONS_00029089|Name=TCONS_00029089|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at sc0000724:126125..130948+ (Clytia hemisphaerica)
atGCTTCAAAGATTGTTGGTTTTTCCAAAACATTCAATATTGCGACATGG
GACTTGTACATTTATGTACTCAACTAAAACAGGAAGTCATAAAAAGTCTC
TAAAAGATGGACCTGATCTACATGAATTCATCGAAAATGAGGATTTAGTG
CGCCAACCTAGAGGCAAACGATTACGTCTTCCGCCTTGGTTGAAAACTGA
AATCCCGTCAGGTGAAAATTATGCAAAGTTGAAAAAGACATTACGCTCTT
TAAATCTTGCTACAGTGTGTGAGGAGGCTAAATGCCCAAATATTGGCGAG
TGCTGGGGTGGCAAAGAGGGGACTGCTACAGCTACAATCATGATTTTAGG
GGACACTTGTACCCGTGGATGTCGTTTCTGTTCTGTTAAAACTGCCAGGC
GTCCACCACCTCCAGATCCAAATGAGCCTGTGAATACAGCCAAAGCAATT
GCTAGTTGGAATTTGAATTATATTGTTATCACGTCGGTTGATCGAGATGA
TCTCCCTGATGGAGGTGCAGGTCACTTTGCTGAAGTTGTCAAACAAGTTA
AATTTCATAACCCAGACCTTCTGGTTGAATGCCTTACACCCGACTTCGCA
GGAAATTTTGACCATGTATCACAAGTAGCACAGTCTGGTTTGGATGTTTT
CGCCCATAATATTGAAACTGTTGAAAGTTTGACCTGGTTTGTGAGGGACC
CAAGAGCTACTTATAAACAAAGTATGAATGTATTGAAGCATGTGAAAGAT
GCGCACCCTAATATCTTAACCAAATCAAGCATTATGGTTGGTTTTGGTGA
AACCAATGAAGAGGTTATCAAAACCATGGAAGATTTACGCAATGCTGGAG
TTGATTGCCTCACAATAGGGCAATATATGCAACCAACCAAAGGCCATGCA
AAGGTCAAAGAGTTTGTTCACCCAAGTCGTTTTGAAGAATGGGAAGAAAT
TGGAAACAAACTAGGATTCGCGTATACAGCGAGCGGACCACTCGTGCGCT
CATCTTATAAAGCAGGAGAGTTTTTCATTGAAAACCtattgaaaaatcga
aaaaattgaatGCTTCAAAGATTGTTGGTTTTTCCAAAACATTCAATATT
GCGACATGGGACTTGTACATTTATGTACTCAACTAAAACAGGAAGTCATA
AAAAGTCTCTAAAAGATGGACCTGATCTACATGAATTCATCGAAAATGAG
GATTTAGTGCGCCAACCTAGAGGCAAACGATTACGTCTTCCGCCTTGGTT
GAAAACTGAAATCCCGTCAGGTGAAAATTATGCAAAGTTGAAAAAGACAT
TACGCTCTTTAAATCTTGCTACAGTGTGTGAGGAGGCTAAATGCCCAAAT
ATTGGCGAGTGCTGGGGTGGCAAAGAGGGGACTGCTACAGCTACAATCAT
GATTTTAGGGGACACTTGTACCCGTGGATGTCGTTTCTGTTCTGTTAAAA
CTGCCAGGCGTCCACCACCTCCAGATCCAAATGAGCCTGTGAATACAGCC
AAAGCAATTGCTAGTTGGAATTTGAATTATATTGTTATCACGTCGGTTGA
TCGAGATGATCTCCCTGATGGAGGTGCAGGTCACTTTGCTGAAGTTGTCA
AACAAGTTAAATTTCATAACCCAGACCTTCTGGTTGAATGCCTTACACCC
GACTTCGCAGGAAATTTTGACCATGTATCACAAGTAGCACAGTCTGGTTT
GGATGTTTTCGCCCATAATATTGAAACTGTTGAAAGTTTGACCTGGTTTG
TGAGGGACCCAAGAGCTACTTATAAACAAAGTATGAATGTATTGAAGCAT
GTGAAAGATGCGCACCCTAATATCTTAACCAAATCAAGCATTATGGTTGG
TTTTGGTGAAACCAATGAAGAGGTTATCAAAACCATGGAAGATTTACGCA
ATGCTGGAGTTGATTGCCTCACAATAGGGCAATATATGCAACCAACCAAA
GGCCATGCAAAGGTCAAAGAGTTTGTTCACCCAAGTCGTTTTGAAGAATG
GGAAGAAATTGGAAACAAACTAGGATTCGCGTATACAGCGAGCGGACCAC
TCGTGCGCTCATCTTATAAAGCAGGAGAGTTTTTCATTGAAAACCtattg
aaaaatcgaaaaaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029089-exon-sc0000724-1491911889:126125..128989 | TCONS_00029089-exon-sc0000724-1491911889:126125..128989 | Clytia hemisphaerica | exon |
| TCONS_00029089-exon-sc0000724-1510915933:126125..128989 | TCONS_00029089-exon-sc0000724-1510915933:126125..128989 | Clytia hemisphaerica | exon |
| TCONS_00029089-exon-sc0000724-1575043694:126125..128989 | TCONS_00029089-exon-sc0000724-1575043694:126125..128989 | Clytia hemisphaerica | exon |
| TCONS_00029089-exon-sc0000724-1491911889:129507..130948 | TCONS_00029089-exon-sc0000724-1491911889:129507..130948 | Clytia hemisphaerica | exon |
| TCONS_00029089-exon-sc0000724-1510915933:129507..130948 | TCONS_00029089-exon-sc0000724-1510915933:129507..130948 | Clytia hemisphaerica | exon |
| TCONS_00029089-exon-sc0000724-1575043694:129507..130948 | TCONS_00029089-exon-sc0000724-1575043694:129507..130948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000724 | supercontig | sc0000724:126125..130948 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0051536 | iron-sulfur cluster binding |
| GO:0003824 | catalytic activity |
| GO:0016992 | lipoate synthase activity |
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009107 | lipoate biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009107 |
lipoate biosynthetic process |
| molecular_function |
GO:0051539 |
4 iron, 4 sulfur cluster binding |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0051536 |
iron-sulfur cluster binding |
| molecular_function |
GO:0016992 |
lipoate synthase activity |
Blast
BLAST of TCONS_00029089 vs. Swiss-Prot (Human)
Match: LIAS (Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=1 SV=3) HSP 1 Score: 424.476 bits (1090), Expect = 2.943e-135 Identity = 208/334 (62.28%), Postives = 259/334 (77.54%), Query Frame = 3
Query: 2586 STKTGSHKKSLKDGPDLHEFIENE------------DLVRQPRGKRLRLPPWLKTEIPSGENYAKLKKTLRSLNLATVCEEAKCPNIGECWGGKE-GTATATIMILGDTCTRGCRFCSVKTARRXXXXXXXXXVNTAKAIASWNLNYIVITSVDRDDLPDGGAGHFAEVVKQVKFHNPDLLVECLTPDFAGNFDHVSQVAQSGLDVFAHNIETVESLTWFVRDPRATYKQSMNVLKHVKDAHPNILTKSSIMVGFGETNEEVIKTMEDLRNAGVDCLTIGQYMQPTKGHAKVKEFVHPSRFEEWEEIGNKLGFAYTASGPLVRSSYKAGEFFIE 3548
S+ K+ L++GPDL +F+ + +L RQ +G+RLRLPPWLKTEIP G+NY KLK TLR+LNL TVCEEA+CPNIGECWGG E TATATIM++GDTCTRGCRFCSVKTAR PPP D +EP NTAKAIA W L+Y+V+TSVDRDD+PDGGA H A+ V +K NP +LVECLTPDF G+ + +VA SGLDV+AHN+ETV L VRDPRA + QS+ VLKH K P++++K+SIM+G GE +E+V TM+ LR A VDCLT+GQYMQPT+ H KV+E++ P +F+ WE++GN+LGF YTASGPLVRSSYKAGEFF++
Sbjct: 29 SSLPDKKKELLQNGPDLQDFVSGDLADRSTWDEYKGNLKRQ-KGERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQSKVRDPRANFDQSLRVLKHAKKVQPDVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTRRHLKVEEYITPEKFKYWEKVGNELGFHYTASGPLVRSSYKAGEFFLK 361
The following BLAST results are available for this feature:
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