TCONS_00029095-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00029095-protein
Unique NameTCONS_00029095-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length100

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00029095-protein ID=TCONS_00029095-protein|Name=TCONS_00029095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MAPTEISVGLNKGHKVTKNAPKTKVSRTKGVLSKRVKFVRDVVQEVCGLA
PYEKRAIELLKVNKDKRALKFVKKRLGTHTRGKRKRDELTRIYKNMRAKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016549XLOC_016549Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00029095TCONS_00029095Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000509Ribosomal_L36e
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 4..97
e-value: 4.9E-44
score: 148.4
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 51..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Blast
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BLAST of TCONS_00029095-protein vs. Swiss-Prot (Human)
Match: RL36 (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 5.120e-39
Identity = 59/87 (67.82%), Postives = 75/87 (86.21%), Query Frame = 0 
Query:    6 ISVGLNKGHKVTKNAPKTKVSRTKGVLSKRVKFVRDVVQEVCGLAPYEKRAIELLKVNKDKRALKFVKKRLGTHTRGKRKRDELTRI 92
            ++VGLNKGHKVTKN  K + SR +G L+K  KFVRD+++EVCG APYE+RA+ELLKV+KDKRALKF+KKR+GTH R KRKR+EL+ +
Sbjct:    7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNV 93
The following BLAST results are available for this feature:
BLAST of TCONS_00029095-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL365.120e-3967.8260S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]
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