TCONS_00043014-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043014-protein
Unique NameTCONS_00043014-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043014-protein ID=TCONS_00043014-protein|Name=TCONS_00043014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MFGKFMNKKFFHPSSYPNQKQKWIHQQRADAKEKQENEKKETYMKEQESY
QSRMLSAKTKEEKMKLDLNFLYDVPPGMKKDDPNEEEEVEVKFEWQKNAP
RSKYLKDLGLACQDQPFGICVKNIRCFKCRQWGHQNTDRECPLFFSNMPS
DGSTGKSQADSLRLSDPLRLVADMKKQHGITLKKSVIGQEIDPMAEHNQL
LESDDDDKQKKSKEKNSLVDNDLQYIASLSNKEKKKLLKTLNKFEKSVNK
KKKRKRKRRNSEDGSSENEWMETKPKLPRRKQKRHRSSRSPSLSEEDRKY
QKKHKQRGNRNVHREDKRRTRHERDFSEGRYSDTEYRRERRHRRESRDTY
PRGDFDNIDGERTHRRNDDDRISRMISECRGSQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026763XLOC_026763Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043014TCONS_00043014Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019339CIR_N_dom
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 234..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..384
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainSMARTSM01083Cir_N_3coord: 10..46
e-value: 0.0013
score: 28.0
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainPFAMPF10197Cir_Ncoord: 10..46
e-value: 3.8E-7
score: 30.1
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 120..262
e-value: 7.1E-4
score: 19.1

Blast
[Close]
BLAST of TCONS_00043014-protein vs. Swiss-Prot (Human)
Match: CIR1 (Corepressor interacting with RBPJ 1 OS=Homo sapiens GN=CIR1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.843e-47
Identity = 98/247 (39.68%), Postives = 148/247 (59.92%), Query Frame = 0 
Query:    2 FGKFMNKKFFHPSSYPNQKQKWIHQQRADAKEKQENEKKETYMKEQESYQSRMLSAKTKEEKMKLDLNFLYDVPPGMKKDDPNEEEEVEVK---FEWQKNAPRSKYLKDLGLACQDQPFGICVKNIRCFKCRQWGHQNTDRECPLF------FSNMPSDGSTGKSQADSLRLSDPLRLVADMKKQHGITLKKSVIGQEIDPMAEHNQLLESDDDDKQKKSKEKNSLVDNDLQYIASLSNKEKKKLLK 239
            F  FM KK FHP+S  N K+ W+ +Q+    +K++ E  + Y+KEQESY +R+L     +E++K  LNF+Y+ PPG KK++  +EE        FEWQK APR KY KD  +  +DQPFGI V+N+RC KC +WGH NTDRECPLF       S++P+DGS G S         P  L+A+M+   G  LK++V+G+ +       + + S+ ++            D +++++ SL+ K+K+KLL+
Sbjct:    5 FANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMG---DERVKNGLNFMYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKD-DMNIRDQPFGIQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGS-GPSM-------HPSELIAEMRNS-GFALKRNVLGRNLTANDPSQEYVASEGEE------------DPEVEFLKSLTTKQKQKLLR 226
The following BLAST results are available for this feature:
BLAST of TCONS_00043014-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CIR15.843e-4739.68Corepressor interacting with RBPJ 1 OS=Homo sapien... [more]
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