TCONS_00043014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043014
Unique NameTCONS_00043014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043014 ID=TCONS_00043014|Name=TCONS_00043014|organism=Clytia hemisphaerica|type=transcript|length=1335bp
ATTGTATCTTTACTTTATTAAGattgacaaaaaataataataatttctat
atatttGGATATTTTTGCAAGTGACAACTCATTTCTCAAGATGTTTGGTA
AGTTTATGAACAAAAAGTTCTTCCATCCTTCTTCTTATCCcaaccaaaaa
caaaaatggatcCACCAGCAACGAGCAGATGCAAAAGAGAAGCAGGAAAA
CGAGAAGAAAGAGACGTACATGAAAGAGCAAGAATCTTATCAAAGTCGAA
TGCTGTCCGCCAAAACTAAAGAAGAGAAGATgaaattagatttgaatttt
ttgtacGATGTTCCACCAGGTATGAAGAAAGATGATccaaatgaagaaga
agaagtggAGGTTAAATTTGAATGGCAGAAAAATGCCCCACGATCCAAAT
ATCTCAAAGATTTAGGTCTTGCATGTCAAGATCAACCATTTGGAATTTGT
GTAAAAAATATTCGTTGTTTCAAATGCAGACAATGGGGCCATCAGAACAC
TGATCGTGAATGTCCTCTGTTCTTTTCCAATATGCCATCTGATGGCTCTA
CTGGCAAAAGTCAAGCAGACAGTTTGCGCTTAAGTGATCCATTGAGACTT
GTGGCAGATATGAAAAAGCAGCATGGTATCACGCTAAAAAAATCAGTGAT
TGGTCAAGAAATTGATCCAATGGCAGAACACAATCAACTTCTTGAAAGTG
ACGAcgatgataaacaaaaaaaatcaaaagaaaaaaactcacTTGTTGAT
AATGATTTGCAATACATAGCATCATTGAGtaacaaagagaaaaagaaact
aTTGAAAACTTTGAACAAGTTTGAGAAATCtgtcaataaaaagaaaaaaa
gaaaaagaaaaagaaggaacAGTGAGGATGGAAGTAGCGAAAATGAGTGG
ATGGAAACCAAACCAAAATTACcaaggagaaaacaaaaaagacatAGAAG
TAGCCGTTCACCATCCTTAAGTGAAGAGGATAGAAAATATCAGAAGAAAC
ATAAACAGAGGGGCAATAGGAATGTACATAGAGAAGATAAAAGAAGGACG
AGACATGAACGTGACTTTAGCGAAGGAAGATACTCTGATACTGAATATCG
TCGTGAAAGAAGACATAGAAGAGAATCTAGGGATACGTACCCAAGGGGAG
ATTTTGACAATATTGATGGAGAAAGAACTCATCGTAGAAATGATGATGAC
AGAATAAGCAGGATGATCAGTGAATGCCGTGGCTCACAGAAATgattttt
attacatcttatTATATTGGGGTAGTCTTTTGCAGAgaattaattttcat
tgtacTCTCAGGTGCTTAATAACCTCGACTCTTAA
Run BLAST on NCBI

protein sequence of TCONS_00043014-protein

>TCONS_00043014-protein ID=TCONS_00043014-protein|Name=TCONS_00043014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MFGKFMNKKFFHPSSYPNQKQKWIHQQRADAKEKQENEKKETYMKEQESY
QSRMLSAKTKEEKMKLDLNFLYDVPPGMKKDDPNEEEEVEVKFEWQKNAP
RSKYLKDLGLACQDQPFGICVKNIRCFKCRQWGHQNTDRECPLFFSNMPS
DGSTGKSQADSLRLSDPLRLVADMKKQHGITLKKSVIGQEIDPMAEHNQL
LESDDDDKQKKSKEKNSLVDNDLQYIASLSNKEKKKLLKTLNKFEKSVNK
KKKRKRKRRNSEDGSSENEWMETKPKLPRRKQKRHRSSRSPSLSEEDRKY
QKKHKQRGNRNVHREDKRRTRHERDFSEGRYSDTEYRRERRHRRESRDTY
PRGDFDNIDGERTHRRNDDDRISRMISECRGSQK
Run BLAST on NCBI

transcript from alignment at sc0003856:1..1871-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043014 ID=TCONS_00043014|Name=TCONS_00043014|organism=Clytia hemisphaerica|type=transcript|length=1871bp|location=Sequence derived from alignment at sc0003856:1..1871- (Clytia hemisphaerica)
ATTGTATCTTTACTTTATTAAGATTGACAAAAAATAATAATAATTTCTAT
ATATTTGGATATTTTTGCAAGTGACAACTCATTTCTCAAGATGTTTGGTA
AGTTTATGAACAAAAAGTTCTTCCATCCTTCTTCTTATCCCAACCAAAAA
CAAAAATGGATCCACCAGCAACGAGCAGATGCAAAAGAGAAGCAGGAAAA
CGAGAAGAAAGAGACGTACATGAAAGAGCAAGAATCTTATCAAAGTCGAA
TGCTGTCCGCCAAAACTAAAGAAGAGAAGATGAAATTAGATTTGAATTTT
TTGTACGATGTTCCACCAGGTATGAAGAAAGATGATCCAAATGAAGAAGA
AGAAGTGGAGGTTTGTCTTGCCAAAGTTCATTTTCTTTATACTTTTCTGG
TTCATGCTCTCCACTCATGCTGAACTTGGATACTACTCTTAGTTTATTCC
TGCAAAAATTAAACATACTTTGATTTTTGGCCACAAGATCATGGCGGGTG
CAAAATTGTAAAGTTGAAGAATTCTTCATTTCCTAATTTTCTCTAGGTGT
TGACTAGGAAAAGCCAAGTTGAATCTCATCATGGGTGATAAACAAATTTC
ACCCTTTTTTTGGATACATGTTAAGGTTGGGTCAAAACTGGAGTGAAAAT
GGGACTGAATTTCTGAAGACTGAATTCCTGAAGACTGAAGTGCTTTACTG
ATAAGATATCAGTAATCAAAATTTGAATACTATCNTGAAAATGGGACTGA
ATTTCTGAAGACTGAATTCCTGAAGACTGAAGTGCTTTACTGATAAGATA
TCAGTAATCAAAATTTGAATACTATCAGTTCAGATCAAAGTGATTACCAG
ACACAATTCCTTATTTTCACCAAGATTTAACTTATTTTACTTCCAGGTTA
AATTTGAATGGCAGAAAAATGCCCCACGATCCAAATATCTCAAAGATTTA
GGTCTTGCATGTCAAGATCAACCATTTGGAATTTGTGTAAAAAATATTCG
TTGTTTCAAATGCAGACAATGGGGCCATCAGAACACTGATCGTGAATGTC
CTCTGTTCTTTTCCAATATGCCATCTGATGGCTCTACTGGCAAAAGTCAA
GCAGACAGTTTGCGCTTAAGTGATCCATTGAGACTTGTGGCAGATATGAA
AAAGCAGCATGGTATCACGCTAAAAAAATCAGTGATTGGTCAAGAAATTG
ATCCAATGGCAGAACACAATCAACTTCTTGAAAGTGACGACGATGATAAA
CAAAAAAAATCAAAAGAAAAAAACTCACTTGTTGATAATGATTTGCAATA
CATAGCATCATTGAGTAACAAAGAGAAAAAGAAACTATTGAAAACTTTGA
ACAAGTTTGAGAAATCTGTCAATAAAAAGAAAAAAAGAAAAAGAAAAAGA
AGGAACAGTGAGGATGGAAGTAGCGAAAATGAGTGGATGGAAACCAAACC
AAAATTACCAAGGAGAAAACAAAAAAGACATAGAAGTAGCCGTTCACCAT
CCTTAAGTGAAGAGGATAGAAAATATCAGAAGAAACATAAACAGAGGGGC
AATAGGAATGTACATAGAGAAGATAAAAGAAGGACGAGACATGAACGTGA
CTTTAGCGAAGGAAGATACTCTGATACTGAATATCGTCGTGAAAGAAGAC
ATAGAAGAGAATCTAGGGATACGTACCCAAGGGGAGATTTTGACAATATT
GATGGAGAAAGAACTCATCGTAGAAATGATGATGACAGAATAAGCAGGAT
GATCAGTGAATGCCGTGGCTCACAGAAATGATTTTTATTACATCTTATTA
TATTGGGGTAGTCTTTTGCAGAGAATTAATTTTCATTGTACTCTCAGGTG
CTTAATAACCTCGACTCTTAA

Coding sequence (CDS) from alignment at sc0003856:1..1871-

>TCONS_00043014 ID=TCONS_00043014|Name=TCONS_00043014|organism=Clytia hemisphaerica|type=CDS|length=2310bp|location=Sequence derived from alignment at sc0003856:1..1871- (Clytia hemisphaerica)
GTTAAATTTGAATGGCAGAAAAATGCCCCACGATCCAAATATCTCAAAGA
TTTAGGTCTTGCATGTCAAGATCAACCATTTGGAATTTGTGTAAAAAATA
TTCGTTGTTTCAAATGCAGACAATGGGGCCATCAGAACACTGATCGTGAA
TGTCCTCTGTTCTTTTCCAATATGCCATCTGATGGCTCTACTGGCAAAAG
TCAAGCAGACAGTTTGCGCTTAAGTGATCCATTGAGACTTGTGGCAGATA
TGAAAAAGCAGCATGGTATCACGCTAAAAAAATCAGTGATTGGTCAAGAA
ATTGATCCAATGGCAGAACACAATCAACTTCTTGAAAGTGACGACGATGA
TAAACAAAAAAAATCAAAAGAAAAAAACTCACTTGTTGATAATGATTTGC
AATACATAGCATCATTGAGTAACAAAGAGAAAAAGAAACTATTGAAAACT
TTGAACAAGTTTGAGAAATCTGTCAATAAAAAGAAAAAAAGAAAAAGAAA
AAGAAGGAACAGTGAGGATGGAAGTAGCGAAAATGAGTGGATGGAAACCA
AACCAAAATTACCAAGGAGAAAACAAAAAAGACATAGAAGTAGCCGTTCA
CCATCCTTAAGTGAAGAGGATAGAAAATATCAGAAGAAACATAAACAGAG
GGGCAATAGGAATGTACATAGAGAAGATAAAAGAAGGACGAGACATGAAC
GTGACTTTAGCGAAGGAAGATACTCTGATACTGAATATCGTCGTGAAAGA
AGACATAGAAGAGAATCTAGGGATACGTACCCAAGGGGAGATTTTGACAA
TATTGATGGAGAAAGAACTCATCGTAGAAATGATGATGACAGAATAAGCA
GGATGATCAGTGAATGCCGTGGCTCACAGAAATGAATGTTTGGTAAGTTT
ATGAACAAAAAGTTCTTCCATCCTTCTTCTTATCCCAACCAAAAACAAAA
ATGGATCCACCAGCAACGAGCAGATGCAAAAGAGAAGCAGGAAAACGAGA
AGAAAGAGACGTACATGAAAGAGCAAGAATCTTATCAAAGTCGAATGCTG
TCCGCCAAAACTAAAGAAGAGAAGATGAAATTAGATTTGAATTTTTTGTA
CGATGTTCCACCAGGTATGAAGAAAGATGATCCAAATGAAGAAGAAGAAG
TGGAGGTTAAATTTGAATGGCAGAAAAATGCCCCACGATCCAAATATCTC
AAAGATTTAGGTCTTGCATGTCAAGATCAACCATTTGGAATTTGTGTAAA
AAATATTCGTTGTTTCAAATGCAGACAATGGGGCCATCAGAACACTGATC
GTGAATGTCCTCTGTTCTTTTCCAATATGCCATCTGATGGCTCTACTGGC
AAAAGTCAAGCAGACAGTTTGCGCTTAAGTGATCCATTGAGACTTGTGGC
AGATATGAAAAAGCAGCATGGTATCACGCTAAAAAAATCAGTGATTGGTC
AAGAAATTGATCCAATGGCAGAACACAATCAACTTCTTGAAAGTGACGAC
GATGATAAACAAAAAAAATCAAAAGAAAAAAACTCACTTGTTGATAATGA
TTTGCAATACATAGCATCATTGAGTAACAAAGAGAAAAAGAAACTATTGA
AAACTTTGAACAAGTTTGAGAAATCTGTCAATAAAAAGAAAAAAAGAAAA
AGAAAAAGAAGGAACAGTGAGGATGGAAGTAGCGAAAATGAGTGGATGGA
AACCAAACCAAAATTACCAAGGAGAAAACAAAAAAGACATAGAAGTAGCC
GTTCACCATCCTTAAGTGAAGAGGATAGAAAATATCAGAAGAAACATAAA
CAGAGGGGCAATAGGAATGTACATAGAGAAGATAAAAGAAGGACGAGACA
TGAACGTGACTTTAGCGAAGGAAGATACTCTGATACTGAATATCGTCGTG
AAAGAAGACATAGAAGAGAATCTAGGGATACGTACCCAAGGGGAGATTTT
GACAATATTGATGGAGAAAGAACTCATCGTAGAAATGATGATGACAGAAT
AAGCAGGATGATCAGTGAATGCCGTGGCTCACAGAAATGAATGTTTGGTA
AGTTTATGAACAAAAAGTTCTTCCATCCTTCTTCTTATCCCAACCAAAAA
CAAAAATGGATCCACCAGCAACGAGCAGATGCAAAAGAGAAGCAGGAAAA
CGAGAAGAAAGAGACGTACATGAAAGAGCAAGAATCTTATCAAAGTCGAA
TGCTGTCCGCCAAAACTAAAGAAGAGAAGATGAAATTAGATTTGAATTTT
TTGTACGATGTTCCACCAGGTATGAAGAAAGATGATCCAAATGAAGAAGA
AGAAGTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026763XLOC_026763Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043014-proteinTCONS_00043014-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043014-exon-sc0003856-1575043694:1512..1871TCONS_00043014-exon-sc0003856-1575043694:1512..1871Clytia hemisphaericaexon
TCONS_00043014-exon-sc0003856-1575043694:1..975TCONS_00043014-exon-sc0003856-1575043694:1..975Clytia hemisphaericaexon
TCONS_00043014-exon-sc0003856-1510915933:1512..1871TCONS_00043014-exon-sc0003856-1510915933:1512..1871Clytia hemisphaericaexon
TCONS_00043014-exon-sc0003856-1510915933:1..975TCONS_00043014-exon-sc0003856-1510915933:1..975Clytia hemisphaericaexon
TCONS_00043014-exon-sc0003856-1491911889:1512..1871TCONS_00043014-exon-sc0003856-1491911889:1512..1871Clytia hemisphaericaexon
TCONS_00043014-exon-sc0003856-1491911889:1..975TCONS_00043014-exon-sc0003856-1491911889:1..975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003856supercontigsc0003856:1..1871 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0195	9.15606	3.81719	3.80433	17.2509	13.1283	12.9626	13.0077	7.62013	9.47165	10.6937	5.09911	8.4867	7.26844	6.11877	8.35198	7.42697	9.33368	6.02882	5.88815	5.20926	4.32398	13.0777	13.8601	10.7236	11.7745	8.29505	5.48683	13.4639	14.2877
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019339CIR_N_dom
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00043014 vs. Swiss-Prot (Human)
Match: CIR1 (Corepressor interacting with RBPJ 1 OS=Homo sapiens GN=CIR1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.030e-37
Identity = 86/198 (43.43%), Postives = 123/198 (62.12%), Query Frame = 1 
Query:  124 HPSSYPNQKQKWIHQQRADAKEKQENEKKETYMKEQESYQSRMLSAKTKEEKMKLDLNFLYDVPPGMKKDDPNXXXXXXXK---FEWQKNAPRSKYLKDLGLACQDQPFGICVKNIRCFKCRQWGHQNTDRECPLF------FSNMPSDGSTGKSQADSLRLSDPLRLVADMKKQHGITLKKSVIGQEI---DPMAEH 681
            HP+S  N K+ W+ +Q+    +K++ E  + Y+KEQESY +R+L     +E++K  LNF+Y+ PPG KK++  +EE        FEWQK APR KY KD  +  +DQPFGI V+N+RC KC +WGH NTDRECPLF       S++P+DGS G S         P  L+A+M+   G  LK++V+G+ +   DP  E+
Sbjct:   15 HPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMG---DERVKNGLNFMYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKD-DMNIRDQPFGIQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGS-GPSM-------HPSELIAEMRNS-GFALKRNVLGRNLTANDPSQEY 199
The following BLAST results are available for this feature:
BLAST of TCONS_00043014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CIR11.030e-3743.43Corepressor interacting with RBPJ 1 OS=Homo sapien... [more]
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