TCONS_00043054-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043054-protein
Unique NameTCONS_00043054-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043054-protein ID=TCONS_00043054-protein|Name=TCONS_00043054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MAAFVPKNGMRVEVIGKGLIGTVSYVGMTAFAAGKWIGVALDEAKGKNDG
SVQGKKYFECPPNHGIFVRQTQITELVDDPKVEEAIKSPRSSMIPPSTGA
SRISGLRKPGSSSGIPPKGASSPLPSKLAAPASSNPKPGNESGMKPPGSS
LRQPSGLKAPSVSSPPPPAPSYNQALKQPSTNPSPSLKQPGLRKPSPTSP
PPSKPASSLKKPSTSSPTPLKTESLKQPSVVKSELKVSSVHNKGLYVFAL
LSCHCKAFVMLKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026796XLOC_026796Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043054TCONS_00043054Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000938CAP-Gly_domain
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000938CAP Gly-rich domainSMARTSM01052CAP_GLY_2coord: 9..74
e-value: 1.2E-29
score: 114.5
IPR000938CAP Gly-rich domainPFAMPF01302CAP_GLYcoord: 9..72
e-value: 3.9E-24
score: 84.4
IPR000938CAP Gly-rich domainGENE3D2.30.30.190coord: 6..90
e-value: 7.1E-26
score: 89.3
IPR000938CAP Gly-rich domainPROSITEPS00845CAP_GLY_1coord: 27..58
IPR000938CAP Gly-rich domainPROSITEPS50245CAP_GLY_2coord: 27..69
score: 17.313
IPR000938CAP Gly-rich domainSUPERFAMILY74924Cap-Gly domaincoord: 8..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..232

Blast
[Close]
BLAST of TCONS_00043054-protein vs. Swiss-Prot (Human)
Match: DCTN1 (Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.671e-31
Identity = 99/244 (40.57%), Postives = 124/244 (50.82%), Query Frame = 0 
Query:    9 GMRVEVIGKGLIGTVSYVGMTAFAAGKWIGVALDEAKGKNDGSVQGKKYFECPPNHGIFVRQTQITELVDDPKVEEAIKSPRSSMIPPSTGASRISGLRKPGSSS--------GIPPKGASSPLPSKLAAPASSNPKPGN--ESGMKPPGSSLRQPSG-LKAPSVSSPPPPAPSYNQALKQPSTNPSPSLKQPGLRKPSPTSPPPSKPASSLKKPSTSSPTPLKTESLKQPSVVKSELKVSSVH 241
            G RVEVIGKG  GTV+YVG T FA GKW+GV LDEAKGKNDG+VQG+KYF C   HGIFVRQ+QI    D         SP +    P + AS++  L++ G+ +        G+ PK A  P   K     +  PKP     +G+    SSL  PSG   A  +SS  P  P+    L  P   P+P L  PG     P  P PSK    L+         L+T  LK+    K++LK    H
Sbjct:   30 GSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADT----TSPET----PDSSASKV--LKREGTDTTAKTSKLRGLKPKKA--PTARK---TTTRRPKPTRPASTGVAGASSSL-GPSGSASAGELSSSEPSTPAQT-PLAAPII-PTPVLTSPG---AVPPLPSPSKEEEGLRAQVRDLEEKLETLRLKRAE-DKAKLKELEKH 251
The following BLAST results are available for this feature:
BLAST of TCONS_00043054-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCTN13.671e-3140.57Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 S... [more]
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