TCONS_00043054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043054
Unique NameTCONS_00043054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043054 ID=TCONS_00043054|Name=TCONS_00043054|organism=Clytia hemisphaerica|type=transcript|length=1012bp
tattgccattttaccctaaatgttgttttttttggagcTATAAAAGCTAG
CTTAACttcaataaaaattatttatttatagatataataaaattgataaa
gcTTAAAAAGCAACAGGCCTAACAATGGCTGCTTTTGTTCCAAAAAATGG
AATGCGTGTTGAAGTTATTGGAAAAGGGCTGATAGGTACTGTCAGTTATG
TTGGTATGACTGCATTTGCTGCTGGCAAGTGGATTGGTGTCGCTTTAGAT
GAAGCTAAAGGAAAGAATGATGGAAGTGTCCAAGGAAAGAAGTATTTTGA
GTGTCCACCAAACCATGGAATCTTCGTGCGCCAAACACAAATCACAGAAC
TGGTTGACGATCCAAAGGTAGAAGAAGCCATCAAATCTCCTCGGTCTAGT
ATGATTCCACCCTCCACTGGTGCCTCCCGTATAAGTGGTTTGCGCAAACC
AGGATCTAGTAGTGGTATACCACCTAAAGGGGCTTCATCTCCTTTACCAT
CAAAACTTGCAGCACCAGCCTCTTCAAATCCCAAGCCAGGGAATGAGTCT
GGAATGAAGCCCCCTGGCTCCTCTCTGAGGCAACCATCAGGGCTTAAGGC
ACCTTCAGTGTCAAGCCCACCACCTCCAGCACCATCATATAACCAAGCAC
TAAAACAACCATCTACTAATCCATCACCTTCCTTAAAGCAACCAGGTCTT
CGAAAACCATCTCCCACAAGCCCACCTCCATCTAAACCTGCATCGTCCCT
TAAAAAGCCATCCACTTCTAGCCCAACACCACTTAAAACAGAAAGTTTAA
AGCAACCCTCTGTTGTGAAAAGTGAACTAAAGGTAAGTAGTGTGCATAAC
AAAGGTTTGTATGTATTCGCTCTTTTGTCCTGTCATTGTAAAGCGTTTGT
CATGCTaaaagtgtaaagaaatttgaatgtttttaaacaatttaaaccat
acatacagtggagtctctataactcgaactgGACAGGGAACACAAGTTTG
TTTGAGTTTAAG
Run BLAST on NCBI

protein sequence of TCONS_00043054-protein

>TCONS_00043054-protein ID=TCONS_00043054-protein|Name=TCONS_00043054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MAAFVPKNGMRVEVIGKGLIGTVSYVGMTAFAAGKWIGVALDEAKGKNDG
SVQGKKYFECPPNHGIFVRQTQITELVDDPKVEEAIKSPRSSMIPPSTGA
SRISGLRKPGSSSGIPPKGASSPLPSKLAAPASSNPKPGNESGMKPPGSS
LRQPSGLKAPSVSSPPPPAPSYNQALKQPSTNPSPSLKQPGLRKPSPTSP
PPSKPASSLKKPSTSSPTPLKTESLKQPSVVKSELKVSSVHNKGLYVFAL
LSCHCKAFVMLKV
Run BLAST on NCBI

transcript from alignment at sc0003887:6157..8003-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043054 ID=TCONS_00043054|Name=TCONS_00043054|organism=Clytia hemisphaerica|type=transcript|length=1847bp|location=Sequence derived from alignment at sc0003887:6157..8003- (Clytia hemisphaerica)
TATTGCCATTTTACCCTAAATGTTGTTTTTTTTGGAGCTATAAAAGCTAG
CTTAACTTCAATAAAAATTATTTATTTATAGATATAATAAAATTGATAAA
GCTTAAAAAGCAACAGGCCTAACAATGGCTGCTTTTGTTCCAAAAAATGG
AATGCGTGTTGAAGTTATTGGAAAAGGGCTGATAGGTAAGCTAGCAAATA
TTATCTTTATTGTCAAGAATCACCTCTCCTATTTTGAAAAAATGATCTTA
GTTATGTTTACCATGGTGAAGATTTCAAACAGTTCTTTTGTACTGTTTTT
AACAGCCAAATTACCCAATTCTGAAATTGCGTTTTGAAACTCAATATTTA
GAGAAATTTCAATTTCTTAGTCTAAGAAATGAGCATTATGCATTTGCTTT
CAGAGAAATTATTTGCCTTATTCATCTGGCTTTATTCATCAATATGTTAA
ACAGTTATTTTCTTTTCAAAGGGAAAGTGTCAGTTGTTTGCTAATTTTAT
GCTGATGCTTTTTAGAAAATTTTTTACCTCCACCAAAACTTTGTTCTAAT
TAGGGAAATGGGCAAAAATTTCACCTGTTTGCCCATACATCACCAAAGGC
TAAGAATGTTTTCAACCTCTTTCTCTTAGGTACTGTCAGTTATGTTGGTA
TGACTGCATTTGCTGCTGGCAAGTGGATTGGTGTCGCTTTAGATGAAGCT
AAAGGAAAGAATGATGGAAGTGGTAAAGATCTAATTGCTAACCCTAACTG
CTTCAAATAATATAGATTTGGAAGTAACTTAAGTTTTCTTAGCCAGTGGT
TTATGTTAAGAAAGTCTTGAGAGTTTAGTGAGCATCCAAGTGTAAAGCTA
TTATAACCTTGAGCTACATAATTTTAACTCCATTGCTTGCTTGGATGGTA
TATGCACATGATATAGNTAGTGAGCATCCAAGTGTAAAGCTATTATAACC
TTGAGCTACATAATTTTAACTCCATTGCTTGCTTGGATGGTATATGCACA
TGATATAGATGTATTTCTAATTTTAAATTTTTAAGATCGTTAGTTGAAAA
CCTGTTGTATAATGTGACCAATTTATAAAGTACCCTAATCTTGCATTAAA
TTTCATTCTCTAGTCCAAGGAAAGAAGTATTTTGAGTGTCCACCAAACCA
TGGAATCTTCGTGCGCCAAACACAAATCACAGAACTGGTTGACGATCCAA
AGGTAGAAGAAGCCATCAAATCTCCTCGGTCTAGTATGATTCCACCCTCC
ACTGGTGCCTCCCGTATAAGTGGTTTGCGCAAACCAGGATCTAGTAGTGG
TATACCACCTAAAGGGGCTTCATCTCCTTTACCATCAAAACTTGCAGCAC
CAGCCTCTTCAAATCCCAAGCCAGGGAATGAGTCTGGAATGAAGCCCCCT
GGCTCCTCTCTGAGGCAACCATCAGGGCTTAAGGCACCTTCAGTGTCAAG
CCCACCACCTCCAGCACCATCATATAACCAAGCACTAAAACAACCATCTA
CTAATCCATCACCTTCCTTAAAGCAACCAGGTCTTCGAAAACCATCTCCC
ACAAGCCCACCTCCATCTAAACCTGCATCGTCCCTTAAAAAGCCATCCAC
TTCTAGCCCAACACCACTTAAAACAGAAAGTTTAAAGCAACCCTCTGTTG
TGAAAAGTGAACTAAAGGTAAGTAGTGTGCATAACAAAGGTTTGTATGTA
TTCGCTCTTTTGTCCTGTCATTGTAAAGCGTTTGTCATGCTAAAAGTGTA
AAGAAATTTGAATGTTTTTAAACAATTTAAACCATACATACAGTGGAGTC
TCTATAACTCGAACTGGACAGGGAACACAAGTTTGTTTGAGTTTAAG

Coding sequence (CDS) from alignment at sc0003887:6157..8003-

>TCONS_00043054 ID=TCONS_00043054|Name=TCONS_00043054|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0003887:6157..8003- (Clytia hemisphaerica)
TCCAAGGAAAGAAGTATTTTGAGTGTCCACCAAACCATGGAATCTTCGTG
CGCCAAACACAAATCACAGAACTGGTTGACGATCCAAAGGTAGAAGAAGC
CATCAAATCTCCTCGGTCTAGTATGATTCCACCCTCCACTGGTGCCTCCC
GTATAAGTGGTTTGCGCAAACCAGGATCTAGTAGTGGTATACCACCTAAA
GGGGCTTCATCTCCTTTACCATCAAAACTTGCAGCACCAGCCTCTTCAAA
TCCCAAGCCAGGGAATGAGTCTGGAATGAAGCCCCCTGGCTCCTCTCTGA
GGCAACCATCAGGGCTTAAGGCACCTTCAGTGTCAAGCCCACCACCTCCA
GCACCATCATATAACCAAGCACTAAAACAACCATCTACTAATCCATCACC
TTCCTTAAAGCAACCAGGTCTTCGAAAACCATCTCCCACAAGCCCACCTC
CATCTAAACCTGCATCGTCCCTTAAAAAGCCATCCACTTCTAGCCCAACA
CCACTTAAAACAGAAAGTTTAAAGCAACCCTCTGTTGTGAAAAGTGAACT
AAAGGTAAGTAGTGTGCATAACAAAGGTTTGTATGTATTCGCTCTTTTGT
CCTGTCATTGTAAAGCGTTTGTCATGCTAAAAGTGTAAGTACTGTCAGTT
ATGTTGGTATGACTGCATTTGCTGCTGGCAAGTGGATTGGTGTCGCTTTA
GATGAAGCTAAAGGAAAGAATGATGGAAGTGATGGCTGCTTTTGTTCCAA
AAAATGGAATGCGTGTTGAAGTTATTGGAAAAGGGCTGATAGTCCAAGGA
AAGAAGTATTTTGAGTGTCCACCAAACCATGGAATCTTCGTGCGCCAAAC
ACAAATCACAGAACTGGTTGACGATCCAAAGGTAGAAGAAGCCATCAAAT
CTCCTCGGTCTAGTATGATTCCACCCTCCACTGGTGCCTCCCGTATAAGT
GGTTTGCGCAAACCAGGATCTAGTAGTGGTATACCACCTAAAGGGGCTTC
ATCTCCTTTACCATCAAAACTTGCAGCACCAGCCTCTTCAAATCCCAAGC
CAGGGAATGAGTCTGGAATGAAGCCCCCTGGCTCCTCTCTGAGGCAACCA
TCAGGGCTTAAGGCACCTTCAGTGTCAAGCCCACCACCTCCAGCACCATC
ATATAACCAAGCACTAAAACAACCATCTACTAATCCATCACCTTCCTTAA
AGCAACCAGGTCTTCGAAAACCATCTCCCACAAGCCCACCTCCATCTAAA
CCTGCATCGTCCCTTAAAAAGCCATCCACTTCTAGCCCAACACCACTTAA
AACAGAAAGTTTAAAGCAACCCTCTGTTGTGAAAAGTGAACTAAAGGTAA
GTAGTGTGCATAACAAAGGTTTGTATGTATTCGCTCTTTTGTCCTGTCAT
TGTAAAGCGTTTGTCATGCTAAAAGTGTAAGTACTGTCAGTTATGTTGGT
ATGACTGCATTTGCTGCTGGCAAGTGGATTGGTGTCGCTTTAGATGAAGC
TAAAGGAAAGAATGATGGAAGTGATGGCTGCTTTTGTTCCAAAAAATGGA
ATGCGTGTTGAAGTTATTGGAAAAGGGCTGATAGTCCAAGGAAAGAAGTA
TTTTGAGTGTCCACCAAACCATGGAATCTTCGTGCGCCAAACACAAATCA
CAGAACTGGTTGACGATCCAAAGGTAGAAGAAGCCATCAAATCTCCTCGG
TCTAGTATGATTCCACCCTCCACTGGTGCCTCCCGTATAAGTGGTTTGCG
CAAACCAGGATCTAGTAGTGGTATACCACCTAAAGGGGCTTCATCTCCTT
TACCATCAAAACTTGCAGCACCAGCCTCTTCAAATCCCAAGCCAGGGAAT
GAGTCTGGAATGAAGCCCCCTGGCTCCTCTCTGAGGCAACCATCAGGGCT
TAAGGCACCTTCAGTGTCAAGCCCACCACCTCCAGCACCATCATATAACC
AAGCACTAAAACAACCATCTACTAATCCATCACCTTCCTTAAAGCAACCA
GGTCTTCGAAAACCATCTCCCACAAGCCCACCTCCATCTAAACCTGCATC
GTCCCTTAAAAAGCCATCCACTTCTAGCCCAACACCACTTAAAACAGAAA
GTTTAAAGCAACCCTCTGTTGTGAAAAGTGAACTAAAGGTAAGTAGTGTG
CATAACAAAGGTTTGTATGTATTCGCTCTTTTGTCCTGTCATTGTAAAGC
GTTTGTCATGCTAAAAGTGTAAGTACTGTCAGTTATGTTGGTATGACTGC
ATTTGCTGCTGGCAAGTGGATTGGTGTCGCTTTAGATGAAGCTAAAGGAA
AGAATGATGGAAGTGATGGCTGCTTTTGTTCCAAAAAATGGAATGCGTGT
TGAAGTTATTGGAAAAGGGCTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026796XLOC_026796Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043054-proteinTCONS_00043054-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043054-exon-sc0003887-1575043694:7819..8003TCONS_00043054-exon-sc0003887-1575043694:7819..8003Clytia hemisphaericaexon
TCONS_00043054-exon-sc0003887-1575043694:7282..7374TCONS_00043054-exon-sc0003887-1575043694:7282..7374Clytia hemisphaericaexon
TCONS_00043054-exon-sc0003887-1575043694:6157..6890TCONS_00043054-exon-sc0003887-1575043694:6157..6890Clytia hemisphaericaexon
TCONS_00043054-exon-sc0003887-1510915933:7819..8003TCONS_00043054-exon-sc0003887-1510915933:7819..8003Clytia hemisphaericaexon
TCONS_00043054-exon-sc0003887-1510915933:7282..7374TCONS_00043054-exon-sc0003887-1510915933:7282..7374Clytia hemisphaericaexon
TCONS_00043054-exon-sc0003887-1510915933:6157..6890TCONS_00043054-exon-sc0003887-1510915933:6157..6890Clytia hemisphaericaexon
TCONS_00043054-exon-sc0003887-1491911889:7819..8003TCONS_00043054-exon-sc0003887-1491911889:7819..8003Clytia hemisphaericaexon
TCONS_00043054-exon-sc0003887-1491911889:7282..7374TCONS_00043054-exon-sc0003887-1491911889:7282..7374Clytia hemisphaericaexon
TCONS_00043054-exon-sc0003887-1491911889:6157..6890TCONS_00043054-exon-sc0003887-1491911889:6157..6890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003887supercontigsc0003887:6157..8003 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.98502	7.84127	4.45219	2.496	14.4187	10.9701	13.8598	15.7938	11.6905	15.8641	11.5038	9.85725	9.49094	10.1006	7.22526	8.53458	13.4658	11.0824	7.65544	13.1221	11.1065	11.7515	7.39601	9.90186	11.1474	10.4145	12.4192	12.2843	10.0528	11.2414
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000938CAP-Gly_domain
Blast
[Close]
BLAST of TCONS_00043054 vs. Swiss-Prot (Human)
Match: DCTN1 (Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.369e-27
Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:  149 GMRVEVIGKGLIGTVSYVGMTAFAAGKWIGVALDEAKGKNDGSVQGKKYFECPPNHGIFVRQTQITELVDDPKVEEAIKSPRSSMIPPSTGASRISGLRKPGSSS--------GIPPKGA 484
            G RVEVIGKG  GTV+YVG T FA GKW+GV LDEAKGKNDG+VQG+KYF C   HGIFVRQ+QI    D         SP +    P + AS++  L++ G+ +        G+ PK A
Sbjct:   30 GSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADT----TSPET----PDSSASKV--LKREGTDTTAKTSKLRGLKPKKA 139
The following BLAST results are available for this feature:
BLAST of TCONS_00043054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCTN11.369e-2750.83Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 S... [more]
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