TCONS_00043236-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043236-protein
Unique NameTCONS_00043236-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length174

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043236-protein ID=TCONS_00043236-protein|Name=TCONS_00043236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MTAVNKVLKNLESKKLIKAVNSVAAGKRKVYMLFNLEPDASVTGGAWYSD
QDFEAEFVDILNQQCFKFLQQKAAQAQEMKVDPLLKRNRSYASSHEVWKF
IAELGISKVSLSVQDIETILNTLIFDGKAEMIIITDVSSTGSSSTSHESN
AVQKKLFRAVKPVVPVXCSTKEII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026949XLOC_026949Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043236TCONS_00043236Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR007832RNA_pol_Rpc34
Vocabulary: Cellular Component
TermDefinition
GO:0005666DNA-directed RNA polymerase III complex
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription from RNA polymerase III promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006383 transcription from RNA polymerase III promoter
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 1..35
e-value: 2.0E-8
score: 33.5
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 2..36
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 2..153
e-value: 1.6E-45
score: 155.9

Blast
[Close]
BLAST of TCONS_00043236-protein vs. Swiss-Prot (Human)
Match: RPC6 (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.261e-77
Identity = 111/165 (67.27%), Postives = 133/165 (80.61%), Query Frame = 0 
Query:    1 MTAVNKVLKNLESKKLIKAVNSVAAGKRKVYMLFNLEPDASVTGGAWYSDQDFEAEFVDILNQQCFKFLQQKAAQAQEMKVDPLLKRNRSYASSHEVWKFIAELGISKVSLSVQDIETILNTLIFDGKAEMIIITDVSSTGSSSTSHESNAVQKKLFRAVKPVVP 165
            +T +NK+LKNLESKKLIKAV SVAA K+KVYML+NL+PD SVTGGAWYSDQDFE+EFV++LNQQCFKFLQ KA  A+E K +P+++RN S+ASSHEVWK+I ELGISKV LS++DIETILNTLI+DGK EM II     T  S   H       KL+RAV P++P
Sbjct:  120 LTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGH------MKLYRAVNPIIP 278
The following BLAST results are available for this feature:
BLAST of TCONS_00043236-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPC61.261e-7767.27DNA-directed RNA polymerase III subunit RPC6 OS=Ho... [more]
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