TCONS_00045140-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045140-protein
Unique NameTCONS_00045140-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045140-protein ID=TCONS_00045140-protein|Name=TCONS_00045140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MDRLDQAYMDQLTKESGSSSSKAHDVRIAEDILTLDELTEMAKELNQGNM
QLDSKVVLEFLRFVSKEWGKGLNERAPDEKMTLQGKLKSGQYEQTMAYLK
PLFRKLRSVSLSRDILNALVCIVEHMMEREYVKASDKYLQMAIGNAPWPI
GVTNPGIHARTGREKISTALVAHVLNDETQRKYIQALKRLMTYCQKRFPA
DPSKCIEYNGVN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028723XLOC_028723Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045140TCONS_00045140Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004098Prp18
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0005681 spliceosomal complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
NoneNo IPR availableGENE3D1.20.940.10coord: 25..204
e-value: 1.2E-66
score: 223.5
NoneNo IPR availableSUPERFAMILY47938Functional domain of the splicing factor Prp18coord: 47..200
IPR004098Prp18PFAMPF02840Prp18coord: 59..199
e-value: 1.7E-56
score: 190.2

Blast
[Close]
BLAST of TCONS_00045140-protein vs. Swiss-Prot (Human)
Match: PRP18 (Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.105e-77
Identity = 112/213 (52.58%), Postives = 154/213 (72.30%), Query Frame = 0 
Query:    1 MDRLDQAYMDQLT--KESGSSSSKAHDVRIAEDILTLDELTEMAKELNQGNMQLDSKVVLEFLRFVSKEWGKGLNERAPDEKMTLQGKLKSGQYEQTMAYLKPLFRKLRSVSLSRDILNALVCIVEHMMEREYVKASDKYLQMAIGNAPWPIGVTNPGIHARTGREKISTALVAHVLNDETQRKYIQALKRLMTYCQKRFPADPSKCIEYNGV 211
            +D++DQ Y++++   +E G   ++ +D+++ E+  T++EL  + + L +G+   D  ++ +FL+F+   W K LN R    K ++QGKL S   +QT +YL+PLFRKLR  +L  DI  ++  I++ M++REYVKA+D YLQMAIGNAPWPIGVT  GIHARTGREKI +  VAHVLNDETQRKYIQ LKRLMT CQK FP DPSKC+EYN +
Sbjct:  131 LDKIDQQYLNEIVGGQEPGEEDTQ-NDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
The following BLAST results are available for this feature:
BLAST of TCONS_00045140-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP184.105e-7752.58Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRP... [more]
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