TCONS_00045140 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045140
Unique NameTCONS_00045140
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1081

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045140 ID=TCONS_00045140|Name=TCONS_00045140|organism=Clytia hemisphaerica|type=transcript|length=1081bp
CCAAAATCCTCGAGGATCCAGATTAGGTTTGACGATTCAAGACAAAAAAG
GATACTATTATACGTTGATCCACACGAAACCGATCACTTTTAAATAATCG
AATATCGGATACTGCCTGTCAGAAGCATAAGTGATTCTGGAAGAATAAGT
AAACAGTTTCACGCCGAATTCTTTAATTAACTCCATTATACTCAATACAT
TTCGACGGATCAGCGGGAAAACGTTTCTGACAATACGTCATTAGTCTTTT
TAAAGCTTGAATATATTTCCTCTGAGTCTCGTCATTCAAGACGTGCGCAA
CGAGCGCGGTTGAAATCTTCTCGCGGCCTGTACGCGCGTGAATACCAGGA
TTGGTCACACCAATAGGCCAAGGAGCATTGCCTATAGCCATTTGTAAATA
TTTATCGCTAGCTTTGACGTATTCTCTCTCCATCATATGCTCAACGATAC
AAACCAATGCGTTTAAAATGTCTCTTGATAAACTAACTGAACGTAGTTTA
CGAAACAAGGGTTTCAAGTATGCCATCGTTTGTTCGTATTGTCCGCTTTT
CAATTTCCCTTGTAAAGTCATTTTCTCATCTGGCGCACGCTCGTTCAATC
CTTTACCCCATTCTTTGGAAACAAAACGTAAAAATTCTAACACTACTTTC
GAATCGAGTTGCATGTTCCCTTGGTTAAGTTCTTTAGCCATTTCAGTTAA
TTCATCTAAGGTCAAAATATCTTCAGCGATTCTAACATCGTGTGCTTTTG
AGCTTGAACTTCCCGATTCTTTAGTGAGTTGGTCCATGTATGCTTGGTCC
AATCTGTCCATGGCCGCTTTGAAATCGTTCCTTAAACCTGTGAAGGCGAG
TGttaaaaaataagataaatcGGAGAAAAAGTGAAAAGGAAGCAACGACT
ATCTGTTGAAATTTGTTAGCAATATCCTCAACACGAATCAACCAGAGGTT
TCAAAATATTACATTTAAAGAGAACAAGAAGAGCCGTTCAAGTTAAGAAA
TTATTCGAGATACATAATTTGGAGTAAAGGAGACTCTAACTTATATCTTA
AAAAATACCTTCAAAAATAGTTAGGTTTTAG
Run BLAST on NCBI

protein sequence of TCONS_00045140-protein

>TCONS_00045140-protein ID=TCONS_00045140-protein|Name=TCONS_00045140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MDRLDQAYMDQLTKESGSSSSKAHDVRIAEDILTLDELTEMAKELNQGNM
QLDSKVVLEFLRFVSKEWGKGLNERAPDEKMTLQGKLKSGQYEQTMAYLK
PLFRKLRSVSLSRDILNALVCIVEHMMEREYVKASDKYLQMAIGNAPWPI
GVTNPGIHARTGREKISTALVAHVLNDETQRKYIQALKRLMTYCQKRFPA
DPSKCIEYNGVN
Run BLAST on NCBI

transcript from alignment at sc0007045:128..1208

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045140 ID=TCONS_00045140|Name=TCONS_00045140|organism=Clytia hemisphaerica|type=transcript|length=1081bp|location=Sequence derived from alignment at sc0007045:128..1208 (Clytia hemisphaerica)
CTAAAACCTAACTATTTTTGAAGGTATTTTTTAAGATATAAGTTAGAGTC
TCCTTTACTCCAAATTATGTATCTCGAATAATTTCTTAACTTGAACGGCT
CTTCTTGTTCTCTTTAAATGTAATATTTTGAAACCTCTGGTTGATTCGTG
TTGAGGATATTGCTAACAAATTTCAACAGATAGTCGTTGCTTCCTTTTCA
CTTTTTCTCCgatttatcttattttttaaCACTCGCCTTCACAGGTTTAA
GGAACGATTTCAAAGCGGCCATGGACAGATTGGACCAAGCATACATGGAC
CAACTCACTAAAGAATCGGGAAGTTCAAGCTCAAAAGCACACGATGTTAG
AATCGCTGAAGATATTTTGACCTTAGATGAATTAACTGAAATGGCTAAAG
AACTTAACCAAGGGAACATGCAACTCGATTCGAAAGTAGTGTTAGAATTT
TTACGTTTTGTTTCCAAAGAATGGGGTAAAGGATTGAACGAGCGTGCGCC
AGATGAGAAAATGACTTTACAAGGGAAATTGAAAAGCGGACAATACGAAC
AAACGATGGCATACTTGAAACCCTTGTTTCGTAAACTACGTTCAGTTAGT
TTATCAAGAGACATTTTAAACGCATTGGTTTGTATCGTTGAGCATATGAT
GGAGAGAGAATACGTCAAAGCTAGCGATAAATATTTACAAATGGCTATAG
GCAATGCTCCTTGGCCTATTGGTGTGACCAATCCTGGTATTCACGCGCGT
ACAGGCCGCGAGAAGATTTCAACCGCGCTCGTTGCGCACGTCTTGAATGA
CGAGACTCAGAGGAAATATATTCAAGCTTTAAAAAGACTAATGACGTATT
GTCAGAAACGTTTTCCCGCTGATCCGTCGAAATGTATTGAGTATAATGGA
GTTAATTAAAGAATTCGGCGTGAAACTGTTTACTTATTCTTCCAGAATCA
CTTATGCTTCTGACAGGCAGTATCCGATATTCGATTATTTAAAAGTGATC
GGTTTCGTGTGGATCAACGTATAATAGTATCCTTTTTTGTCTTGAATCGT
CAAACCTAATCTGGATCCTCGAGGATTTTGG

Coding sequence (CDS) from alignment at sc0007045:128..1208

>TCONS_00045140 ID=TCONS_00045140|Name=TCONS_00045140|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0007045:128..1208 (Clytia hemisphaerica)
ATGGACAGATTGGACCAAGCATACATGGACCAACTCACTAAAGAATCGGG
AAGTTCAAGCTCAAAAGCACACGATGTTAGAATCGCTGAAGATATTTTGA
CCTTAGATGAATTAACTGAAATGGCTAAAGAACTTAACCAAGGGAACATG
CAACTCGATTCGAAAGTAGTGTTAGAATTTTTACGTTTTGTTTCCAAAGA
ATGGGGTAAAGGATTGAACGAGCGTGCGCCAGATGAGAAAATGACTTTAC
AAGGGAAATTGAAAAGCGGACAATACGAACAAACGATGGCATACTTGAAA
CCCTTGTTTCGTAAACTACGTTCAGTTAGTTTATCAAGAGACATTTTAAA
CGCATTGGTTTGTATCGTTGAGCATATGATGGAGAGAGAATACGTCAAAG
CTAGCGATAAATATTTACAAATGGCTATAGGCAATGCTCCTTGGCCTATT
GGTGTGACCAATCCTGGTATTCACGCGCGTACAGGCCGCGAGAAGATTTC
AACCGCGCTCGTTGCGCACGTCTTGAATGACGAGACTCAGAGGAAATATA
TTCAAGCTTTAAAAAGACTAATGACGTATTGTCAGAAACGTTTTCCCGCT
GATCCGTCGAAATGTATTGAGTATAATGGAGTTAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028723XLOC_028723Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045140-proteinTCONS_00045140-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045140-exon-sc0007045-1491911889:128..1208TCONS_00045140-exon-sc0007045-1491911889:128..1208Clytia hemisphaericaexon
TCONS_00045140-exon-sc0007045-1510915933:128..1208TCONS_00045140-exon-sc0007045-1510915933:128..1208Clytia hemisphaericaexon
TCONS_00045140-exon-sc0007045-1575043694:128..1208TCONS_00045140-exon-sc0007045-1575043694:128..1208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007045supercontigsc0007045:128..1208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
102.649	95.2194	41.3214	31.0072	35.3341	27.2712	26.9907	29.137	21.908	20.6816	18.7138	15.5533	11.2293	10.1724	13.6998	12.793	18.0506	15.6212	10.3799	12.8079	21.8714	22.4491	60.1308	54.8797	19.7444	20.8961	23.4264	20.2384	45.4738	50.0113
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004098Prp18
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0005681 spliceosomal complex
Blast
[Close]
BLAST of TCONS_00045140 vs. Swiss-Prot (Human)
Match: PRP18 (Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 1.147e-79
Identity = 120/222 (54.05%), Postives = 162/222 (72.97%), Query Frame = -1 
Query:  179 GLRNDFKAAMDRLDQAYMDQLT--KESGSSSSKAHDVRIAEDILTLDELTEMAKELNQGNMQLDSKVVLEFLRFVSKEWGKGLNERAPDEKMTLQGKLKSGQYEQTMAYLKPLFRKLRSVSLSRDILNALVCIVEHMMEREYVKASDKYLQMAIGNAPWPIGVTNPGIHARTGREKISTALVAHVLNDETQRKYIQALKRLMTYCQKRFPADPSKCIEYNGV 838
            GLRND KAA+D++DQ Y++++   +E G   ++ +D+++ E+  T++EL  + + L +G+   D  ++ +FL+F+   W K LN R    K ++QGKL S   +QT +YL+PLFRKLR  +L  DI  ++  I++ M++REYVKA+D YLQMAIGNAPWPIGVT  GIHARTGREKI +  VAHVLNDETQRKYIQ LKRLMT CQK FP DPSKC+EYN +
Sbjct:  122 GLRNDLKAALDKIDQQYLNEIVGGQEPGEEDTQ-NDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
The following BLAST results are available for this feature:
BLAST of TCONS_00045140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP181.147e-7954.05Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRP... [more]
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