TCONS_00046279-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00046279-protein
Unique Name	TCONS_00046279-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	765

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00046279-protein ID=TCONS_00046279-protein|Name=TCONS_00046279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=765bp
MADTVTEESGQESCWSSSDERSSGNEYSVKMKNEKLPEDEALKELYRKKK
KKKKHKRKHKKKKDRTADSSDEEDQKEGEGKKNKEEKKKANGVIKSNQLL
LKVDAILESALSAVEEKNNIKKDSSIKDTKKTVVEDVKKNSNKDNKRTSK
TRSRSKDRGESKKHSRSKSREKRKRSRSRDRKRSRSRSRDRKRSRSRSKD
RKRSRSRSKDRKRSRSRSRDRKRSRSRSRDRRRSRSRSRDRRRSRSRERR
SRRSRSRSKDRRRRSRSRSRSKDRRRRSRSRSRDRRHRSTSRDRRHRSRS
KSRNRETVDTKQDIEGPVPSKWDVKETEAMRIVNAETDNVFQKVSALRRS
GIEIKYGNTVPGKDARDILNAKAKSSSTSKKERSDPYGKWESVPDGGNRD
LNKFTKLCLEISAKDSKYDSHLADSRRSSDDDEAEIHHPFISKPAPMMFP
SSSGGYSGSSRSRIAMNPAQAIMAGSMNSITANPADIITGPLEKHFPVSA
GNDHREKENAKGEEADLPVYEEVDEGPTKPINVSAVIGRRMGAQQRLNAN
PNDQLARSVLEECDLKLKGWTEKNRKPGKFTGERGVLMNKKEIAGAVETW
VRKDFFHNLMPVCGGVGMRMLKNMGWKQGTALGKNREGYVAPVTFDVKVG
RSGLASQEEQPQRGRGLYGNNSFQRSNLPKKKLAPVNNIGGKHPVSVLAE
NCSKRKMGMPEYECVFEGGSSHNKTFLIKCTIQNVDYQPSVASPNKKHAK
AQAAMTALKILGFDQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029552	XLOC_029552	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00046279	TCONS_00046279	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom
IPR000467	G_patch_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..62
None	No IPR available	GENE3D	3.30.160.20		coord: 682..764 e-value: 4.9E-16 score: 58.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..396
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..461
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 652..676
None	No IPR available	CDD	cd00048	DSRM	coord: 693..761 e-value: 2.30365E-13 score: 65.3715
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 688..763
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 694..762 e-value: 2.5E-17 score: 73.6
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 694..761 e-value: 5.5E-12 score: 46.1
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 693..763 score: 16.189
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 611..657 e-value: 1.9E-6 score: 37.5
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 615..654 e-value: 7.7E-10 score: 38.4
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 613..659 score: 13.707

Blast

[Close]

BLAST of TCONS_00046279-protein vs. Swiss-Prot (Human)
Match: SON (Protein SON OS=Homo sapiens GN=SON PE=1 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 4.345e-39
Identity = 112/359 (31.20%), Postives = 176/359 (49.03%), Query Frame = 0

Query:  397 GNRDLNKFTKLCLEISAKDSKYDSHLADSRRSSDDDEAE---IHHPF-ISKPAPMMFPSSSGGYSGSSRSRIAMNPAQAIMAGSMNSITANPADIITGP-----LEKHFPVSAGNDHREKE--NAKGEEADLPVYEEVDEG-----------PTKPINVSAVIGRRMGAQQRLNANPNDQLARSVLEECDLKLKGWTEKNRKPGKFTGERGV-LMNKKEIA--GAVETWVRKDFFHNLMPVCGGVGMRMLKNMGWKQGTALGKNREGYVAPVTFDVKVGRSGLASQEEQPQRGRGLYGNNSFQRSNLPKKKLAPVNNIGGKHPVSVLAENCSKRKMGMPEYECVFEGGSSHNKTFLIKC 730
            G   + + T+ C +I A+  + D  + +    SD++E E    HHPF +S+P P+ F                          ++N   A P    T P     L K FPVS+G+ HR+KE  +  GE   +PV +  +E            P++P+++S  +  R  AQ+RL+ N  D  A S+L     ++  W + N  PG+FTG  GV ++ ++++A  GA + W++KD F    PV GG+G  +++ MGW++G  LGKN+EG   P+  D K  R GL +  E+ Q+  G +               A + ++ GKHPVS L E C+KR+   PE+  V + G  H K FL + 
Sbjct: 2098 GGATIEELTEKCKQI-AQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFKLSEPKPIFF--------------------------NLNIAAAKP----TPPKSQVTLTKEFPVSSGSQHRKKEADSVYGEW--VPVEKNGEENKDDDNVFSSNLPSEPVDISTAMSERALAQKRLSENAFDLEAMSMLNRAQERIDAWAQLNSIPGQFTGSTGVQVLTQEQLANTGA-QAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNFS--------------AAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRV 2408

The following BLAST results are available for this feature:

BLAST of TCONS_00046279-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00046279-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SON	4.345e-39	31.20	Protein SON OS=Homo sapiens GN=SON PE=1 SV=4	[more]

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TCONS_00046279-protein (polypeptide) - C. hemisphaerica