TCONS_00046314-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046314-protein
Unique NameTCONS_00046314-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046314-protein ID=TCONS_00046314-protein|Name=TCONS_00046314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
LVKPSEFNRFTLLKKFNKIFLVIDNIMNVSKNMSTPLLMSPELSNPPEIE
KILDTTLTKDNKRYYKVKWIKVTWESEDDIAYFNNLIEAFWTEYTKECLL
QSETESCSNDLTSKDACQYNNLDNIGSKEMYNYNLLQQHNDVVSDSHQSS
DKHLLSHTPVESNLLSISSHEMLSPSNCSSHHVAAPSDMLHSHITNNELD
MIPSFSQDCDYSLDESNLLKSNEEQNQTQMIETDVTPAKQLSHTLLCKDI
EKTEPNKSSLQKVVYKCSFCAIDFESKEKYLEHEKSHADRKCIICGKEFQ
RLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNVRNHECST
CGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNK
PFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLHMV
SKHKDSEESATSSESTEKKSQDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029567XLOC_029567Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046314TCONS_00046314Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR019786Zinc_finger_PHD-type_CS
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 402..424
e-value: 0.0042
score: 26.3
coord: 265..287
e-value: 0.036
score: 23.2
coord: 290..312
e-value: 0.036
score: 23.2
coord: 374..396
e-value: 0.01
score: 25.0
coord: 346..368
e-value: 0.044
score: 22.9
coord: 318..340
e-value: 0.0047
score: 26.1
coord: 430..453
e-value: 0.0053
score: 26.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 267..287
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 348..368
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 320..340
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 404..424
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 292..312
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 376..396
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 432..453
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 346..373
score: 12.133
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 402..429
score: 13.817
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 374..401
score: 14.544
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 430..458
score: 10.637
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 290..317
score: 12.071
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 265..292
score: 9.91
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 318..345
score: 14.253
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 396..448
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 355..411
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 264..312
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 299..355
NoneNo IPR availableGENE3D2.10.69.10coord: 384..412
e-value: 3.1E-17
score: 62.0
coord: 328..357
e-value: 5.4E-15
score: 54.8
NoneNo IPR availableGENE3D3.30.160.60coord: 440..470
e-value: 8.6E-4
score: 18.8
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 346..368
e-value: 0.0054
score: 17.0
coord: 430..453
e-value: 0.008
score: 16.5
coord: 374..396
e-value: 0.013
score: 15.8
coord: 318..340
e-value: 0.008
score: 16.5
coord: 402..424
e-value: 0.002
score: 18.4
NoneNo IPR availableGENE3D2.40.50.40coord: 47..98
e-value: 7.3E-7
score: 28.4
NoneNo IPR availableGENE3D3.30.160.60coord: 107..276
e-value: 0.13
score: 11.9
NoneNo IPR availableGENE3D3.30.160.60coord: 413..439
e-value: 2.2E-15
score: 56.0
coord: 302..327
e-value: 4.2E-14
score: 51.9
coord: 277..301
e-value: 6.8E-9
score: 35.2
NoneNo IPR availableGENE3D2.20.28.30coord: 358..383
e-value: 3.6E-13
score: 49.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..473
NoneNo IPR availableCDDcd00024CHROMOcoord: 48..93
e-value: 1.95374E-5
score: 41.0955
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 292..379
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 47..96

Blast
BLAST of TCONS_00046314-protein vs. Swiss-Prot (Human)
Match: ZSC22 (Zinc finger and SCAN domain-containing protein 22 OS=Homo sapiens GN=ZSCAN22 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.830e-43
Identity = 80/203 (39.41%), Postives = 108/203 (53.20%), Query Frame = 0
Query:  249 DIEKTEPNKSSLQKVVYKCSFCAIDFESKEKYLEHEKSHADR---KCIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLH 448
            D   TEP  +   K   KC  C   F+S      H+K+H+ +    C  CGK F R  HL  H   H   +P ECKECGKAF     L +HQ++H+  + ++C  CG  F R+ HL +H  VH   + + C  C K F Q + L  H  +HTG KP+KC  C  +F+D + L RH   H+ EKPYQC +C K F + +SL  H
Sbjct:  252 DAYGTEPPYTYSGKRSSKCRECRKMFQSASALEAHQKTHSRKTPYACSECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEH 454          

HSP 2 Score: 156.377 bits (394), Expect = 3.005e-42
Identity = 74/197 (37.56%), Postives = 105/197 (53.30%), Query Frame = 0
Query:  256 NKSSLQKVVYKCSFCAIDFESKEKYLEHEKSHADRK---CIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLHM 449
             K+  +K  Y CS C   F       +H+  H   K   C  CGK F R+ HL  H   H   +P++C ECGK F     L +HQ+VH+  R +EC  CG  F ++ HL +H  +H   K + C  C + F   SAL  H+ +H+G KP++CKVC  +FA  ++L  H   H  EKPY+C  C K F R ++L +H+
Sbjct:  287 QKTHSRKTPYACSECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMVHL 483          

HSP 3 Score: 118.242 bits (295), Expect = 9.781e-29
Identity = 58/163 (35.58%), Postives = 81/163 (49.69%), Query Frame = 0
Query:  265 YKCSFCAIDFESKEKYLEHEKSHADRK---CIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTH 424
            ++C  C   F       +H++ H   K   C  CGK F R  HL  H   H   RP+EC  CGKAF +   L +HQ++H+  + ++C  CG  F     L RH  +H   K + C +C K F Q S+L  H  +HTG KP+KC  C  +F+  + L  H   H
Sbjct:  324 HECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMVHLRIH 486          
The following BLAST results are available for this feature:
BLAST of TCONS_00046314-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZSC222.830e-4339.41Zinc finger and SCAN domain-containing protein 22 ... [more]
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