TCONS_00046543-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046543-protein
Unique NameTCONS_00046543-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1237

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046543-protein ID=TCONS_00046543-protein|Name=TCONS_00046543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1237bp
MRGVLTIQLLLYFVVTAKKLHSQRDEQNIVISRTKAHEFLTLRSSSSKRV
RKSTYIHLEEECCNESCNLEEMEERHEDNGFAKPQPYIIHWLREKPNCKH
FYCDDATPIETSRRCDFKIDCANGEDEQECTFKTNTNPTASLTGGMKGEL
FISVDGSDIYTTWLDTKSSAVISKSLGCSSAGRFLKQYRLPSNSYRQSLM
TLQCYGNEKDIKDCKYSLDSSYHYNLYGVICLNENEITLKNQGRGIDGSV
YGATTYISGMPICYAYPERDTAQVICNTIKDSSYIGAPYRKERRYSYELF
LIVKCNDPNKRLSRCVYYQREYYQTRSLCSSGVICLKETFKQPCIHCPLK
AMGTVVIATDSNYKWTLKETNVFCRQEHNTNYKVGIKNKYQLVKTNTTKC
SISNIRCKGDESDLRKCDFQLLTKCPTKPFYQIHIDCLPNFKELIQIIEM
VDTKTNDLQNKYNSVKKAKEKLILEYGQWECTGNPTGEGIKAYCSTFSAL
RNLENILKPRKDESIIFIRTNHDIKRELSEKLLDERFSSLHTQISALGTR
TTEFQLQLSQHLQRMSSFKVNAIKAKITKRLLPWKKQLEMLFESKLDTFK
TQTKRLKVYADRVQRQELAEATLDYVLASVSFGLSCGSAFAQPGAFFKDV
IQLGVNLKSLLSKDSQRNAKGKRIKYLMNEYEKLTDITYKFKKSRTAKQQ
QLSEAHNFLAEIKSSKGKFNEELAKRFLEKFGAIGIIIGSIDINEFGMTL
NDIVGGLCDVIIGSSSRSEAIQDEASEGLCAETKKTIGSIIKIMESTSDN
GKTLSQILVELAQLKLEESSAARLSITLESNLNSDLEVKLNQMLLIAVIQ
AQKRKLIEEACNMITYLNFGEEQDFCINMRNNPENGDLTLLISYIHQDEC
FNPINRDVLIPVNNTQSLDLVPGVVDSEELFGRTDDKTWKTSGDISFDIP
GQEWMVENGWIQKGDQGPFYLKQFEIFYPPQHPDGKTRYLVESKIELVKN
KLNGKTYTFDQPMVYNLKYYDNYDHQLPCNGEIHAPYRDCPNDQSYSVCI
SQKGNLPGPYYPTTNSTWRISMRSKYELPRIFSSTPFFLNAKIQICSRPK
QVNHEWMSYGSSAGFIFQKNCCPAGHYYDVKERVKAAGQSPCKPCPSGIP
RMGGYFCEMCPPGMEQGTDVYGCLPTVIANQSSTTNAPANQTIKSENPID
PTPQSLANQNTXNLPLQMLQPIKLSNQKIRSIQPLNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029703XLOC_029703Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046543TCONS_00046543Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002172LDrepeatLR_classA_rpt
IPR017448SRCR-like_dom
IPR001190SRCR
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005044scavenger receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0005044 scavenger receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 455..475
NoneNo IPR availableGENE3D4.10.400.10coord: 93..139
e-value: 1.1E-5
score: 24.6
NoneNo IPR availableCDDcd00112LDLacoord: 100..130
e-value: 5.30048E-4
score: 38.3418
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 97..132
e-value: 0.0049
score: 24.9
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 97..131
score: 9.375
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 97..131
IPR017448SRCR-like domainGENE3D3.10.250.10coord: 350..438
e-value: 3.4E-5
score: 23.7
IPR017448SRCR-like domainGENE3D3.10.250.10coord: 147..244
e-value: 1.7E-6
score: 27.7
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 362..439
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 164..236
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 163..232
score: 8.64

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046543-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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