TCONS_00047011-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047011-protein
Unique NameTCONS_00047011-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047011-protein ID=TCONS_00047011-protein|Name=TCONS_00047011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp
AAYPERNSTIIMKFHIIFLVFASILAVVNALDATQNTSTLLSASFVASRS
SLQQVYNSNTTDYEGIHSNDDEFIGQTIEYLIQEDDFHQLVILTDKPIND
LQIYNQDENKEIANLYFKELNENILNIIVYEILEDLHIHTVVLLVEDALW
KMVQQHIQTHIEKPILWIRLLHALTPLKETSGDSCQFQMASYKLENAING
NANDLLTKITKAKQECTKNKQLTIKAVGVLEDYLFEDVHTVSDDNGKVHC
KQDKYLCHKALDVQGEAWNLTCCAGLHADLAAKIFETLGYKWSLWIVPDN
VYGGFTNCSNPKDHTTCQWNGMVEELRQGRADVAIAGMTITNARLEVMDF
TEDIFVTRIAVALRNIPEKLSFVNWKFIESLDWSLLFALLVNLLIAVGVM
YYLQKLVMRYKPDSIKYPIKESFSYGAGLTFQRDLAGKTPDNWSARTVAI
SYAVALTIIMSTYMANITASSVLSESFDDFKGLHDEKILNPTADFKYGVA
DSRATGNLLKSXPTTDFKYGVADSRATGNLLKSSEKWAKPYSEFVTNYLT
LGVADGIEKVNE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029995XLOC_029995Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047011TCONS_00047011Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 413..485
e-value: 1.2E-7
score: 31.6
NoneNo IPR availableGENE3D3.40.190.10coord: 212..374
e-value: 7.3E-18
score: 63.8
NoneNo IPR availableGENE3D1.10.287.70coord: 375..519
e-value: 1.3E-7
score: 30.6
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 272..382
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 272..362
e-value: 2.1E-15
score: 56.8

Blast
[Close]
BLAST of TCONS_00047011-protein vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.456e-24
Identity = 74/248 (29.84%), Postives = 116/248 (46.77%), Query Frame = 0 
Query:  272 CCAGLHADLAAKIFETLGYKWSLWIVPDNVYGGFTNCSNPKDHTTCQWNGMVEELRQGRADVAIAGMTITNARLEVMDFTEDIFVTRIAVALRNIPEKLSFVNWKFIESLDWSLLFALLVNLLI-AVGVMYYLQKLVMRYKPDSIKYPIKESFSYGA----GLTFQRDLAGKTPDNWSARTVAISYAVALTIIMSTYMANITASSVLSESFDDFKGLHDEKILNPTADFKYG-VADSRATGNLLKSXP 513
            CC G   DL  KI E + + + L+IV D  YG + N           W G+V +L +G A +A+   +I  AR +V+DFT   F T + + +R      +     F+  L W++   + V L I AV +  Y  K      P         SFS        L F R +A K P  W+ R +   +A+     +STY AN+ A  V  + +++  G+HD K+ +P+  F++G V +S A   + +S P
Sbjct:  575 CCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNG---------HWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRT--RDTAAPIGAFMWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFP 811
The following BLAST results are available for this feature:
BLAST of TCONS_00047011-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A4.456e-2429.84Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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