TCONS_00047011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047011
Unique NameTCONS_00047011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047011 ID=TCONS_00047011|Name=TCONS_00047011|organism=Clytia hemisphaerica|type=transcript|length=1689bp
AGGCAGCATACCCAGAAAGGAATTCTACAATCATAATGAAGTTTCATATC
ATATTTTTGGTATTTGCATCAATTTTGGCAGTGGTCAACGCCTTAGATGC
CACCCAAAATACTTCAACTTTACTATCAGCCAGCTTTGTCGCATCAAGAT
CCTCGTTACAGCAAGTTTACAATAGTAATACGACAGATTACGAAGGAATA
CATTCAAATGACGACGAATTCATAGGACAAACCATCGAATATTTAATCCA
AGAAGACGATTTCCATCAATTAGTTATCCTCACTGACAAACCTATCAACG
ACCTCCAAATATACAATCAAGACGAAAACAAGGAAATTGCAAATCTGTAT
TTCAAAGAACTCAATGAAAACATACTGAACAtcatcgtgtatgaaattct
tGAAGATTTACACATTCATACAGTTGTATTGTTGGTTGAGGATGCTTTAT
GGAAGATGGTGCAACAACATATACAGACCCACATTGAGAAACCTATATTA
TGGATTCGGCTCCTTCACGCGTTGACTCCTCTTAAAGAAACTTCCGGAGA
TTCTTGTCAATTTCAAATGGCAAGTTATAAGCTCGAGAATGCAATAAATG
GCAACGCCAACGACTTGCTCACGAAGATTACAAAAGCCAAACAAGAATGC
ACCAAGAACAAGCAACTTACAATTAAAGCCGTTGGCGTACTGGAAGATTA
TCTTTTCGAAGATGTCCACACTGTATCAGATGATAATGGGAAAGTACATT
GCAAACAGGATAAATACTTGTGTCATAAAGCTTTGGATGTGCAGGGAGAA
GCGTGGAATCTTACTTGTTGTGCTGGCCTTCACGCAGACCTTGCAGCAAA
GATCTTTGAGACGTTGGGTTACAAATGGTCTCTGTGGATCGTCCCTGATA
ACGTTTATGGTGGTTTCACTAATTGCTCCAATCCAAAAGACCACACAACT
TGTCAATGGAATGGTATGGTGGAAGAATTAAGACAAGGTCGAGCTGATGT
CGCCATCGCTGGCATGACCATAACAAATGCTAGACTAGAAGTGATGGATT
TCACAGAAGATATATTTGTCACACGAATAGCAGTCGCACTACGAaatata
cctgaaaaattatcCTTCGTGAACTGGAAATTCATTGAAAGTCTTGACTG
GTCACTCTTGTTCGCCTTACTGGTGAATCTATTGATAGCTGTTGGAGTGA
TGTATTATCTTCAGAAACTGGTCATGCGTTATAAACCAGATTCAATCAAA
TACCCGATTAAAGAGTCGTTTTCTTATGGCGCTGGTTTGACCTTCCAACG
TGATCTTGCAGGGAAGACTCCAGACAATTGGTCCGCAAGAACGGTCGCCA
TTTCTTATGCTGTTGCCTTGACGATCATCATGTCAACATACATGGCAAAT
ATTACGGCATCGAGTGTACTTTCGGAAAGTTTTGACGATTTCAAAGGTCT
GCATGATGAAAAGattttgaacCCAACCGCAGATTTCAAGTACGGCGTTG
CTGATTCCAGGGCTACGGGCAACTTATTGAAGTCATNTCCAACCACAGAT
TTCAAGTACGGCGTTGCTGATTCCAGGGCTACGGGCAACTTATTGAAGTC
ATCAGAGAAATGGGCCAAACCGTATTCAGAGTTTGTGACCAATTATCTTA
CACTGGGTGTGGCGGATGGTATTGAAAAGGTTAACGAAG
Run BLAST on NCBI

protein sequence of TCONS_00047011-protein

>TCONS_00047011-protein ID=TCONS_00047011-protein|Name=TCONS_00047011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp
AAYPERNSTIIMKFHIIFLVFASILAVVNALDATQNTSTLLSASFVASRS
SLQQVYNSNTTDYEGIHSNDDEFIGQTIEYLIQEDDFHQLVILTDKPIND
LQIYNQDENKEIANLYFKELNENILNIIVYEILEDLHIHTVVLLVEDALW
KMVQQHIQTHIEKPILWIRLLHALTPLKETSGDSCQFQMASYKLENAING
NANDLLTKITKAKQECTKNKQLTIKAVGVLEDYLFEDVHTVSDDNGKVHC
KQDKYLCHKALDVQGEAWNLTCCAGLHADLAAKIFETLGYKWSLWIVPDN
VYGGFTNCSNPKDHTTCQWNGMVEELRQGRADVAIAGMTITNARLEVMDF
TEDIFVTRIAVALRNIPEKLSFVNWKFIESLDWSLLFALLVNLLIAVGVM
YYLQKLVMRYKPDSIKYPIKESFSYGAGLTFQRDLAGKTPDNWSARTVAI
SYAVALTIIMSTYMANITASSVLSESFDDFKGLHDEKILNPTADFKYGVA
DSRATGNLLKSXPTTDFKYGVADSRATGNLLKSSEKWAKPYSEFVTNYLT
LGVADGIEKVNE
Run BLAST on NCBI

transcript from alignment at scaffold_120:4479..7588-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047011 ID=TCONS_00047011|Name=TCONS_00047011|organism=Clytia hemisphaerica|type=transcript|length=3110bp|location=Sequence derived from alignment at scaffold_120:4479..7588- (Clytia hemisphaerica)
AGGCAGCATACCCAGAAAGGAATTCTACAATCATAATGAAGTTTCATATC
ATATTTTTGGTATTTGCATCAATTTTGGCAGTGGTCAACGCCTTAGATGC
CACCCAAAATACTTCAACTTTACTATCAGCCAGCTTTGTCGCATCAAGAT
CCTCGTTACAGCAAGTTTACAATAGTAATACGACAGATGTAAGAGCTCGT
TGATTATAACTTTTCAAATATCAAATTTACCATCCTTCTTTTTTTCAACC
TTTTGATTTTGAGATGAAATTATAACGAGAGGGTCAGCATCTAATTTCAG
ATTTTTGTCTCTAGCATGTACCTTTGTGGAGGCTAAAGAATACCTAGTAA
TTTTTACAACCTAAGCTCTAAGAGTTCAGCCAGCCACATAAAGTTGCAAA
CAACCGAACAACCTCGGTCAATACAGTACAGATTCACTTTGCAAACATTT
TTAGTTTTATTATTTCATCCGTCCATGTCATTATTTCATCCACAAAACAG
TACGAAGGAATACATTCAANCAAACATTTTTAGTTTTATTTGATTCATCC
GTCCATGTCATTATTTCATCCACAAAGCAGTACGAAGGAATACATTCAAA
TGACGACGAATTCATAGGACAAACCATCGAATATTTAATCCAAGAAGACG
ATTTCCATCAATTAGTTATCCTCACTGACAAACCTATCAACGACCTCCAA
ATATACAATCAAGACGAAAACAAGGAAATTGCAAATCTGTATTTCAAAGA
ACTCAATGAAAACATACTGAACATCATCGTGTATGAAATTCTTGAAGATT
TACACATTCATACAGTTGTATTGTTGGTTGAGGATGCTTTATGGAAGATG
GTGCAACAACATATACAGACCCACATTGAGAAACCTATATTATGGATTCG
GCTCCTTCACGCGTTGACTCCTCTTAAAGAAACTTCCGGAGATTCTTGTC
AATTTCAAATGGCAAGTTATAAGCTCGAGAATGCAATAAATGGGTTAGTT
ATAACTTCTTAGTTTATCATTAATTGCGTTTCAAGTGATTTTACGTTTCA
AGGTTTAGGCTTCATTGAGCCCATTCCCCTGAGGAGGGGGCACTCAAGGT
AAACGACCTACCGTACGTGCGGCCCTTAAGGGTCATTTTTCCGAGCTTCC
CAAAGTGCACTGTAAGGGTCGAAATGAGCAAAGCGGAGGAAAAGTATACT
CTAAGGGTGTAAAATTTGGAAAATTTGACAATATTTCGACTTAAAATAGT
CAAAAAATTTCAAGAAAATGCACCGTAAGGGTTGATTTTTCACCCAAACT
TTGCTAAATTTTCTCCACAATGTAAGGGTCCGATTTCAAAGGCCTAAATT
TGGCCCGCACATTCGTCTCCCCTGATTTAAATTTTTCATTTTTAATTTTT
CGTGATCTTCCTTTTTTGCATAATACTAGTTAAGTGTTTTAGAGATAGGT
ATATTATATATCTCTATATTTTCGTTTATCTATATACAGCAACGCCAACG
ACTTGCTCACGAAGATTACAAAAGCCAAACAAGAATGCACCAAGAACAAG
CAACTTACAATTAAAGCCGTTGGCGTACTGGAAGATTATCTTTTCGAAGA
TGTCCACACTGTATCAGATGATAATGGGAAAGTACATTGCAAACAGGATA
AATACTTGTGTCATAAAGCTTTGGATGTGCAGGGAGAAGCGTGGAATCTT
ACTTGTTGTGCTGGCCTTCACGCAGACCTTGCAGCAAAGATCTTTGAGGT
ACTTTGATTCTTTTAAATATTGATGATTTAGGTAAAATAGTCAGTCTACC
GATAATAGTTTCATAGCGTCATTCAAAACAGAATTTACTAGGAGCAGTTT
CTTTAGGTTTTATTACTATTGTTAGGCCCTTCCTTAGCACATTTTTTTTA
ATTCATTTAACGGTATGGTATATCCATTTTGTGATAATATAAATTGAACA
TACACTCATCTCAAAATAGACACACTTCTTTTTGTCAGAATTTTGTCAGT
TGTTTATTTTTGTACATCAGAAGTCAGGCCGTGTATCAAACTTTGGTTTT
GCATTATCATTTTAATCAACTATTTTGTGTATTGTAGACGTTGGGTTACA
AATGGTCTCTGTGGATCGTCCCTGATAACGTTTATGGTGGTTTCACTAAT
TGCTCCAATCCAAAAGACCACACAACTTGTCAATGGAATGGTATGGTGGA
AGAATTAAGACAAGGTCGAGCTGATGTCGCCATCGCTGGCATGACCATAA
CAAATGCTAGACTAGAAGTGATGGATTTCACAGAAGATATATTTGTCACA
CGAATAGCAGTCGCACTACGAAATATACCTGAAAAATTATCCTTCGTGAA
CTGGAAATTCATTGAAAGTCTTGACTGGTCACTCTTGTTCGCCTTACTGG
TGAATCTATTGATAGCTGTTGGAGTGATGTATTATCTTCAGAAACTGGTC
ATGCGTTATAAACCAGATTCAATCAAATACCCGATTAAAGAGTCGTTTTC
TTATGGCGCTGGTTTGACCTTCCAACGTGATCTTGCAGGGAAGACTCCAG
ACAATTGGTCCGCAAGAACGGTCGCCATTTCTTATGCTGTTGCCTTGACG
ATCATCATGTCAACATACATGGCAAATATTACGGCATCGAGTGTACTTTC
GGAAAGTTTTGACGATTTCAAAGGTCTGCATGATGAAAAGGTACAACTTA
CTAAGAAACTAAGAGCTTTTTCCGAAGTCGAAGGTTTAAATAGGAGAGAA
ACTTCAACTGCGTGACGTTTTAAAATATGTGTTTGTCTGGTTATCTATTT
TTAACTTTTCTGCTAAAACATTTCTCAACATTACAGAATCCCTCAAACGA
TCTCATTATTTTTTTGTTTCAAACTTTGTTTTAGATTTTGAACCCAACCG
CAGATTTCAAGTACGGCGTTGCTGATTCCAGGGCTACGGGCAACTTATTG
AAGTCATNTCCAACCACAGATTTCAAGTACGGCGTTGCTGATTCCAGGGC
TACGGGCAACTTATTGAAGTCATCAGAGAAATGGGCCAAACCGTATTCAG
AGTTTGTGACCAATTATCTTACACTGGGTGTGGCGGATGGTATTGAAAAG
GTTAACGAAG

Coding sequence (CDS) from alignment at scaffold_120:4479..7588-

>TCONS_00047011 ID=TCONS_00047011|Name=TCONS_00047011|organism=Clytia hemisphaerica|type=CDS|length=8430bp|location=Sequence derived from alignment at scaffold_120:4479..7588- (Clytia hemisphaerica)
ATTTTGAACCCAACCGCAGATTTCAAGTACGGCGTTGCTGATTCCAGGGC
TACGGGCAACTTATTGAAGTCATNTCCAACCACAGATTTCAAGTACGGCG
TTGCTGATTCCAGGGCTACGGGCAACTTATTGAAGTCATCAGAGAAATGG
GCCAAACCGTATTCAGAGTTTGTGACCAATTATCTTACACTGGGTGTGGC
GGATGGTATTGAAAAGGTTAACGAAACGTTGGGTTACAAATGGTCTCTGT
GGATCGTCCCTGATAACGTTTATGGTGGTTTCACTAATTGCTCCAATCCA
AAAGACCACACAACTTGTCAATGGAATGGTATGGTGGAAGAATTAAGACA
AGGTCGAGCTGATGTCGCCATCGCTGGCATGACCATAACAAATGCTAGAC
TAGAAGTGATGGATTTCACAGAAGATATATTTGTCACACGAATAGCAGTC
GCACTACGAAATATACCTGAAAAATTATCCTTCGTGAACTGGAAATTCAT
TGAAAGTCTTGACTGGTCACTCTTGTTCGCCTTACTGGTGAATCTATTGA
TAGCTGTTGGAGTGATGTATTATCTTCAGAAACTGGTCATGCGTTATAAA
CCAGATTCAATCAAATACCCGATTAAAGAGTCGTTTTCTTATGGCGCTGG
TTTGACCTTCCAACGTGATCTTGCAGGGAAGACTCCAGACAATTGGTCCG
CAAGAACGGTCGCCATTTCTTATGCTGTTGCCTTGACGATCATCATGTCA
ACATACATGGCAAATATTACGGCATCGAGTGTACTTTCGGAAAGTTTTGA
CGATTTCAAAGGTCTGCATGATGAAAAGCAACGCCAACGACTTGCTCACG
AAGATTACAAAAGCCAAACAAGAATGCACCAAGAACAAGCAACTTACAAT
TAAAGCCGTTGGCGTACTGGAAGATTATCTTTTCGAAGATGTCCACACTG
TATCAGATGATAATGGGAAAGTACATTGCAAACAGGATAAATACTTGTGT
CATAAAGCTTTGGATGTGCAGGGAGAAGCGTGGAATCTTACTTGTTGTGC
TGGCCTTCACGCAGACCTTGCAGCAAAGATCTTTGAGTACGAAGGAATAC
ATTCAAATGACGACGAATTCATAGGACAAACCATCGAATATTTAATCCAA
GAAGACGATTTCCATCAATTAGTTATCCTCACTGACAAACCTATCAACGA
CCTCCAAATATACAATCAAGACGAAAACAAGGAAATTGCAAATCTGTATT
TCAAAGAACTCAATGAAAACATACTGAACATCATCGTGTATGAAATTCTT
GAAGATTTACACATTCATACAGTTGTATTGTTGGTTGAGGATGCTTTATG
GAAGATGGTGCAACAACATATACAGACCCACATTGAGAAACCTATATTAT
GGATTCGGCTCCTTCACGCGTTGACTCCTCTTAAAGAAACTTCCGGAGAT
TCTTGTCAATTTCAAATGGCAAGTTATAAGCTCGAGAATGCAATAAATGG
GCAGCATACCCAGAAAGGAATTCTACAATCATAATGAAGTTTCATATCAT
ATTTTTGGTATTTGCATCAATTTTGGCAGTGGTCAACGCCTTAGATGCCA
CCCAAAATACTTCAACTTTACTATCAGCCAGCTTTGTCGCATCAAGATCC
TCGTTACAGCAAGTTTACAATAGTAATACGACAGATATTTTGAACCCAAC
CGCAGATTTCAAGTACGGCGTTGCTGATTCCAGGGCTACGGGCAACTTAT
TGAAGTCATNTCCAACCACAGATTTCAAGTACGGCGTTGCTGATTCCAGG
GCTACGGGCAACTTATTGAAGTCATCAGAGAAATGGGCCAAACCGTATTC
AGAGTTTGTGACCAATTATCTTACACTGGGTGTGGCGGATGGTATTGAAA
AGGTTAACGAAACGTTGGGTTACAAATGGTCTCTGTGGATCGTCCCTGAT
AACGTTTATGGTGGTTTCACTAATTGCTCCAATCCAAAAGACCACACAAC
TTGTCAATGGAATGGTATGGTGGAAGAATTAAGACAAGGTCGAGCTGATG
TCGCCATCGCTGGCATGACCATAACAAATGCTAGACTAGAAGTGATGGAT
TTCACAGAAGATATATTTGTCACACGAATAGCAGTCGCACTACGAAATAT
ACCTGAAAAATTATCCTTCGTGAACTGGAAATTCATTGAAAGTCTTGACT
GGTCACTCTTGTTCGCCTTACTGGTGAATCTATTGATAGCTGTTGGAGTG
ATGTATTATCTTCAGAAACTGGTCATGCGTTATAAACCAGATTCAATCAA
ATACCCGATTAAAGAGTCGTTTTCTTATGGCGCTGGTTTGACCTTCCAAC
GTGATCTTGCAGGGAAGACTCCAGACAATTGGTCCGCAAGAACGGTCGCC
ATTTCTTATGCTGTTGCCTTGACGATCATCATGTCAACATACATGGCAAA
TATTACGGCATCGAGTGTACTTTCGGAAAGTTTTGACGATTTCAAAGGTC
TGCATGATGAAAAGCAACGCCAACGACTTGCTCACGAAGATTACAAAAGC
CAAACAAGAATGCACCAAGAACAAGCAACTTACAATTAAAGCCGTTGGCG
TACTGGAAGATTATCTTTTCGAAGATGTCCACACTGTATCAGATGATAAT
GGGAAAGTACATTGCAAACAGGATAAATACTTGTGTCATAAAGCTTTGGA
TGTGCAGGGAGAAGCGTGGAATCTTACTTGTTGTGCTGGCCTTCACGCAG
ACCTTGCAGCAAAGATCTTTGAGTACGAAGGAATACATTCAAATGACGAC
GAATTCATAGGACAAACCATCGAATATTTAATCCAAGAAGACGATTTCCA
TCAATTAGTTATCCTCACTGACAAACCTATCAACGACCTCCAAATATACA
ATCAAGACGAAAACAAGGAAATTGCAAATCTGTATTTCAAAGAACTCAAT
GAAAACATACTGAACATCATCGTGTATGAAATTCTTGAAGATTTACACAT
TCATACAGTTGTATTGTTGGTTGAGGATGCTTTATGGAAGATGGTGCAAC
AACATATACAGACCCACATTGAGAAACCTATATTATGGATTCGGCTCCTT
CACGCGTTGACTCCTCTTAAAGAAACTTCCGGAGATTCTTGTCAATTTCA
AATGGCAAGTTATAAGCTCGAGAATGCAATAAATGGGCAGCATACCCAGA
AAGGAATTCTACAATCATAATGAAGTTTCATATCATATTTTTGGTATTTG
CATCAATTTTGGCAGTGGTCAACGCCTTAGATGCCACCCAAAATACTTCA
ACTTTACTATCAGCCAGCTTTGTCGCATCAAGATCCTCGTTACAGCAAGT
TTACAATAGTAATACGACAGATATTTTGAACCCAACCGCAGATTTCAAGT
ACGGCGTTGCTGATTCCAGGGCTACGGGCAACTTATTGAAGTCATNTCCA
ACCACAGATTTCAAGTACGGCGTTGCTGATTCCAGGGCTACGGGCAACTT
ATTGAAGTCATCAGAGAAATGGGCCAAACCGTATTCAGAGTTTGTGACCA
ATTATCTTACACTGGGTGTGGCGGATGGTATTGAAAAGGTTAACGAAACG
TTGGGTTACAAATGGTCTCTGTGGATCGTCCCTGATAACGTTTATGGTGG
TTTCACTAATTGCTCCAATCCAAAAGACCACACAACTTGTCAATGGAATG
GTATGGTGGAAGAATTAAGACAAGGTCGAGCTGATGTCGCCATCGCTGGC
ATGACCATAACAAATGCTAGACTAGAAGTGATGGATTTCACAGAAGATAT
ATTTGTCACACGAATAGCAGTCGCACTACGAAATATACCTGAAAAATTAT
CCTTCGTGAACTGGAAATTCATTGAAAGTCTTGACTGGTCACTCTTGTTC
GCCTTACTGGTGAATCTATTGATAGCTGTTGGAGTGATGTATTATCTTCA
GAAACTGGTCATGCGTTATAAACCAGATTCAATCAAATACCCGATTAAAG
AGTCGTTTTCTTATGGCGCTGGTTTGACCTTCCAACGTGATCTTGCAGGG
AAGACTCCAGACAATTGGTCCGCAAGAACGGTCGCCATTTCTTATGCTGT
TGCCTTGACGATCATCATGTCAACATACATGGCAAATATTACGGCATCGA
GTGTACTTTCGGAAAGTTTTGACGATTTCAAAGGTCTGCATGATGAAAAG
CAACGCCAACGACTTGCTCACGAAGATTACAAAAGCCAAACAAGAATGCA
CCAAGAACAAGCAACTTACAATTAAAGCCGTTGGCGTACTGGAAGATTAT
CTTTTCGAAGATGTCCACACTGTATCAGATGATAATGGGAAAGTACATTG
CAAACAGGATAAATACTTGTGTCATAAAGCTTTGGATGTGCAGGGAGAAG
CGTGGAATCTTACTTGTTGTGCTGGCCTTCACGCAGACCTTGCAGCAAAG
ATCTTTGAGTACGAAGGAATACATTCAAATGACGACGAATTCATAGGACA
AACCATCGAATATTTAATCCAAGAAGACGATTTCCATCAATTAGTTATCC
TCACTGACAAACCTATCAACGACCTCCAAATATACAATCAAGACGAAAAC
AAGGAAATTGCAAATCTGTATTTCAAAGAACTCAATGAAAACATACTGAA
CATCATCGTGTATGAAATTCTTGAAGATTTACACATTCATACAGTTGTAT
TGTTGGTTGAGGATGCTTTATGGAAGATGGTGCAACAACATATACAGACC
CACATTGAGAAACCTATATTATGGATTCGGCTCCTTCACGCGTTGACTCC
TCTTAAAGAAACTTCCGGAGATTCTTGTCAATTTCAAATGGCAAGTTATA
AGCTCGAGAATGCAATAAATGGGCAGCATACCCAGAAAGGAATTCTACAA
TCATAATGAAGTTTCATATCATATTTTTGGTATTTGCATCAATTTTGGCA
GTGGTCAACGCCTTAGATGCCACCCAAAATACTTCAACTTTACTATCAGC
CAGCTTTGTCGCATCAAGATCCTCGTTACAGCAAGTTTACAATAGTAATA
CGACAGATATTTTGAACCCAACCGCAGATTTCAAGTACGGCGTTGCTGAT
TCCAGGGCTACGGGCAACTTATTGAAGTCATNTCCAACCACAGATTTCAA
GTACGGCGTTGCTGATTCCAGGGCTACGGGCAACTTATTGAAGTCATCAG
AGAAATGGGCCAAACCGTATTCAGAGTTTGTGACCAATTATCTTACACTG
GGTGTGGCGGATGGTATTGAAAAGGTTAACGAAACGTTGGGTTACAAATG
GTCTCTGTGGATCGTCCCTGATAACGTTTATGGTGGTTTCACTAATTGCT
CCAATCCAAAAGACCACACAACTTGTCAATGGAATGGTATGGTGGAAGAA
TTAAGACAAGGTCGAGCTGATGTCGCCATCGCTGGCATGACCATAACAAA
TGCTAGACTAGAAGTGATGGATTTCACAGAAGATATATTTGTCACACGAA
TAGCAGTCGCACTACGAAATATACCTGAAAAATTATCCTTCGTGAACTGG
AAATTCATTGAAAGTCTTGACTGGTCACTCTTGTTCGCCTTACTGGTGAA
TCTATTGATAGCTGTTGGAGTGATGTATTATCTTCAGAAACTGGTCATGC
GTTATAAACCAGATTCAATCAAATACCCGATTAAAGAGTCGTTTTCTTAT
GGCGCTGGTTTGACCTTCCAACGTGATCTTGCAGGGAAGACTCCAGACAA
TTGGTCCGCAAGAACGGTCGCCATTTCTTATGCTGTTGCCTTGACGATCA
TCATGTCAACATACATGGCAAATATTACGGCATCGAGTGTACTTTCGGAA
AGTTTTGACGATTTCAAAGGTCTGCATGATGAAAAGCAACGCCAACGACT
TGCTCACGAAGATTACAAAAGCCAAACAAGAATGCACCAAGAACAAGCAA
CTTACAATTAAAGCCGTTGGCGTACTGGAAGATTATCTTTTCGAAGATGT
CCACACTGTATCAGATGATAATGGGAAAGTACATTGCAAACAGGATAAAT
ACTTGTGTCATAAAGCTTTGGATGTGCAGGGAGAAGCGTGGAATCTTACT
TGTTGTGCTGGCCTTCACGCAGACCTTGCAGCAAAGATCTTTGAGTACGA
AGGAATACATTCAAATGACGACGAATTCATAGGACAAACCATCGAATATT
TAATCCAAGAAGACGATTTCCATCAATTAGTTATCCTCACTGACAAACCT
ATCAACGACCTCCAAATATACAATCAAGACGAAAACAAGGAAATTGCAAA
TCTGTATTTCAAAGAACTCAATGAAAACATACTGAACATCATCGTGTATG
AAATTCTTGAAGATTTACACATTCATACAGTTGTATTGTTGGTTGAGGAT
GCTTTATGGAAGATGGTGCAACAACATATACAGACCCACATTGAGAAACC
TATATTATGGATTCGGCTCCTTCACGCGTTGACTCCTCTTAAAGAAACTT
CCGGAGATTCTTGTCAATTTCAAATGGCAAGTTATAAGCTCGAGAATGCA
ATAAATGGGCAGCATACCCAGAAAGGAATTCTACAATCATAATGAAGTTT
CATATCATATTTTTGGTATTTGCATCAATTTTGGCAGTGGTCAACGCCTT
AGATGCCACCCAAAATACTTCAACTTTACTATCAGCCAGCTTTGTCGCAT
CAAGATCCTCGTTACAGCAAGTTTACAATAGTAATACGACAGATATTTTG
AACCCAACCGCAGATTTCAAGTACGGCGTTGCTGATTCCAGGGCTACGGG
CAACTTATTGAAGTCATNTCCAACCACAGATTTCAAGTACGGCGTTGCTG
ATTCCAGGGCTACGGGCAACTTATTGAAGTCATCAGAGAAATGGGCCAAA
CCGTATTCAGAGTTTGTGACCAATTATCTTACACTGGGTGTGGCGGATGG
TATTGAAAAGGTTAACGAAACGTTGGGTTACAAATGGTCTCTGTGGATCG
TCCCTGATAACGTTTATGGTGGTTTCACTAATTGCTCCAATCCAAAAGAC
CACACAACTTGTCAATGGAATGGTATGGTGGAAGAATTAAGACAAGGTCG
AGCTGATGTCGCCATCGCTGGCATGACCATAACAAATGCTAGACTAGAAG
TGATGGATTTCACAGAAGATATATTTGTCACACGAATAGCAGTCGCACTA
CGAAATATACCTGAAAAATTATCCTTCGTGAACTGGAAATTCATTGAAAG
TCTTGACTGGTCACTCTTGTTCGCCTTACTGGTGAATCTATTGATAGCTG
TTGGAGTGATGTATTATCTTCAGAAACTGGTCATGCGTTATAAACCAGAT
TCAATCAAATACCCGATTAAAGAGTCGTTTTCTTATGGCGCTGGTTTGAC
CTTCCAACGTGATCTTGCAGGGAAGACTCCAGACAATTGGTCCGCAAGAA
CGGTCGCCATTTCTTATGCTGTTGCCTTGACGATCATCATGTCAACATAC
ATGGCAAATATTACGGCATCGAGTGTACTTTCGGAAAGTTTTGACGATTT
CAAAGGTCTGCATGATGAAAAGCAACGCCAACGACTTGCTCACGAAGATT
ACAAAAGCCAAACAAGAATGCACCAAGAACAAGCAACTTACAATTAAAGC
CGTTGGCGTACTGGAAGATTATCTTTTCGAAGATGTCCACACTGTATCAG
ATGATAATGGGAAAGTACATTGCAAACAGGATAAATACTTGTGTCATAAA
GCTTTGGATGTGCAGGGAGAAGCGTGGAATCTTACTTGTTGTGCTGGCCT
TCACGCAGACCTTGCAGCAAAGATCTTTGAGTACGAAGGAATACATTCAA
ATGACGACGAATTCATAGGACAAACCATCGAATATTTAATCCAAGAAGAC
GATTTCCATCAATTAGTTATCCTCACTGACAAACCTATCAACGACCTCCA
AATATACAATCAAGACGAAAACAAGGAAATTGCAAATCTGTATTTCAAAG
AACTCAATGAAAACATACTGAACATCATCGTGTATGAAATTCTTGAAGAT
TTACACATTCATACAGTTGTATTGTTGGTTGAGGATGCTTTATGGAAGAT
GGTGCAACAACATATACAGACCCACATTGAGAAACCTATATTATGGATTC
GGCTCCTTCACGCGTTGACTCCTCTTAAAGAAACTTCCGGAGATTCTTGT
CAATTTCAAATGGCAAGTTATAAGCTCGAGAATGCAATAAATGGGCAGCA
TACCCAGAAAGGAATTCTACAATCATAATGAAGTTTCATATCATATTTTT
GGTATTTGCATCAATTTTGGCAGTGGTCAACGCCTTAGATGCCACCCAAA
ATACTTCAACTTTACTATCAGCCAGCTTTGTCGCATCAAGATCCTCGTTA
CAGCAAGTTTACAATAGTAATACGACAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029995XLOC_029995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047011-exon-scaffold_120-1575043694:7401..7588TCONS_00047011-exon-scaffold_120-1575043694:7401..7588Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1575043694:6596..7008TCONS_00047011-exon-scaffold_120-1575043694:6596..7008Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1575043694:5841..6099TCONS_00047011-exon-scaffold_120-1575043694:5841..6099Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1575043694:4899..5501TCONS_00047011-exon-scaffold_120-1575043694:4899..5501Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1575043694:4479..4704TCONS_00047011-exon-scaffold_120-1575043694:4479..4704Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1510915933:7401..7588TCONS_00047011-exon-scaffold_120-1510915933:7401..7588Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1510915933:6596..7008TCONS_00047011-exon-scaffold_120-1510915933:6596..7008Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1510915933:5841..6099TCONS_00047011-exon-scaffold_120-1510915933:5841..6099Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1510915933:4899..5501TCONS_00047011-exon-scaffold_120-1510915933:4899..5501Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1510915933:4479..4704TCONS_00047011-exon-scaffold_120-1510915933:4479..4704Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1491911889:7401..7588TCONS_00047011-exon-scaffold_120-1491911889:7401..7588Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1491911889:6596..7008TCONS_00047011-exon-scaffold_120-1491911889:6596..7008Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1491911889:5841..6099TCONS_00047011-exon-scaffold_120-1491911889:5841..6099Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1491911889:4899..5501TCONS_00047011-exon-scaffold_120-1491911889:4899..5501Clytia hemisphaericaexon
TCONS_00047011-exon-scaffold_120-1491911889:4479..4704TCONS_00047011-exon-scaffold_120-1491911889:4479..4704Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047011-proteinTCONS_00047011-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:4479..7588 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.934886	0.724654	0.352842	0.477971	0.0646537	0.10218	0.0924572	0.0865573	0.141402	0.0500426	0.145718	0.0478946	0.0159427	0.165566	0.0952825	0.146075	0.0719811	0.0737783	0.152893	0.133326	0.347654	0.135659	1.56666	2.97358	1.95602	2.36588	13.5752	15.47	0.186245	0.189754
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
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BLAST of TCONS_00047011 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.223e-21
Identity = 74/248 (29.84%), Postives = 116/248 (46.77%), Query Frame = 3 
Query:  816 CCAGLHADLAAKIFETLGYKWSLWIVPDNVYGGFTNCSNPKDHTTCQWNGMVEELRQGRADVAIAGMTITNARLEVMDFTEDIFVTRIAVALRNIPEKLSFVNWKFIESLDWSXXXXXXXXXXI-AVGVMYYLQKLVMRYKPDSIKYPIKESFSYGA----GLTFQRDLAGKTPDNWSARTVAISYAVALTIIMSTYMANITASSVLSESFDDFKGLHDEKILNPTADFKYG-VADSRATGNLLKSXP 1541
            CC G   DL  KI E + + + L+IV D  YG + N           W G+V +L +G A +A+   +I  AR +V+DFT   F T + + +R      +     F+  L W++   + V L I AV +  Y  K      P         SFS        L F R +A K P  W+ R +   +A+     +STY AN+ A  V  + +++  G+HD K+ +P+  F++G V +S A   + +S P
Sbjct:  575 CCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNG---------HWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRT--RDTAAPIGAFMWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFP 811
The following BLAST results are available for this feature:
BLAST of TCONS_00047011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A1.223e-2129.84Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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