TCONS_00053489-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053489-protein
Unique Name	TCONS_00053489-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	307

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053489-protein ID=TCONS_00053489-protein|Name=TCONS_00053489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
XREVFDIVHKWGRDFVKNLSSKVPRNIEPFRIFLTGGGGVGKSHLLTTIY
HSLSKLLMYRGGEPTKERILVLAPTGVAAINVNGTTIHTGLIIPTTEFFS
LSGSSKANLQKKLACVEVIMIDEISMVPNRLFRKIDQRLRDIFNMKKPFA
GKSVLLCGDLYQLPPIFKDPIYKIPILKKDPNNGNENKKRESHDRPSLMD
ELYGFELWRSFQMAELTEVMRQRDDIHFVDLLNQIRVGELDDEKEELLKS
RFISKDSPNYPADVTHIFAENKPVDAYNLKKLNELSTEMHLITAQDEVPK
HLTSSDM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033765	XLOC_033765	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053489	TCONS_00053489	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010285	DNA_helicase_pif1-like
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0000723	telomere maintenance

Vocabulary: **Molecular Function**
Term	Definition
GO:0003678	DNA helicase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
molecular_function	GO:0003678	DNA helicase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.300		coord: 18..241 e-value: 3.9E-17 score: 61.7
IPR010285	DNA helicase Pif1-like	PFAM	PF05970	PIF1	coord: 28..169 e-value: 8.2E-27 score: 94.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 145..166 coord: 208..288
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 196..209 coord: 27..166

Blast

[Close]

BLAST of TCONS_00053489-protein vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.766e-22
Identity = 85/292 (29.11%), Postives = 123/292 (42.12%), Query Frame = 0

Query:   32 IFLTGGGGVGKSHLLTTIYHSLSKLLMYRGGEPTKERILVLAPTGVAAINVNGTTIHTGLIIPTTEFFSLSGSSKANLQKKLAC------------VEVIMIDEISMVPNRLFRKIDQRLRDIFNMKKPFAGKSVLLCGDLYQLPPIFKDPIYKIPILKKDPNNGNENKKRESHDRPSLMDELYGFELWRSF--QMAELTEVMRQRDDIHFVDLLNQIRVGELDDEKEELLK---SRFISKDSPNYPADVTHIFAENKPVDAYNLKKLNELSTEMHLITAQDEVPKHLTSSD 306
            IF TG  G GKS+LL  I  SL          PT    +  A TGVAA ++ GTT+H          F+  GS +A L + +A              + ++IDEISMV   LF K++   R +    KPF G  +++CGD  QLPP+ K          + P    ++K                   W+       ELT+V RQ D   F+ LL  +R+G   DE    L+   S  + +D        T +      V   N ++L EL  ++H   A D  P+  ++ D
Sbjct:  224 IFFTGSAGTGKSYLLKRILGSLP---------PTG--TVATASTGVAACHIGGTTLHA---------FAGIGSGQAPLAQCVALAQRPGVRQGWLNCQRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKG--------SQPPRFCFQSKS------------------WKRCVPVTLELTKVWRQADQT-FISLLQAVRLGRCSDEVTRQLQATASHKVGRDG----IVATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLD 464

The following BLAST results are available for this feature:

BLAST of TCONS_00053489-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053489-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PIF1	2.766e-22	29.11	ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN...	[more]

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TCONS_00053489-protein (polypeptide) - C. hemisphaerica