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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053489 ID=TCONS_00053489|Name=TCONS_00053489|organism=Clytia hemisphaerica|type=transcript|length=2038bp
cgaaatattcaaaataatctttgatgcaaaaaactctttgtttCTTCTAA
ATTGCCTTTGTATGTAAATTTTCActgttaaaaatatattttgaagttCA
TGAAAACctagtttttaattattttctacAAATCAACCTTCCCTTGTTGT
ATATTTTAATCAACTTAAAATTTACATACACAGACAAGGTGAGAAAGGTA
TAAAAAGAAGATGCAAAATGTAATAGAAAAAAAGAGCTGCAATATGCCTA
ATCGAGTCAAAAAGAATATTGCATCCCCCTCACACCGCAATTGCCTATCC
CATTGAATTTAAGCCGATGGCTAGAAGTGAATCTTTAATCTTGTATGAAA
AGCATGCGTGCAGCATAACTTTGATACGATTGAACTTGCTTCAATTCCTA
CCACACACATTCACTTCTAGCCTTTGGCTTGAATTCATTGGCCTACCCCC
ATCCCCTCCCTCCCCAGATAAGCAGGCTAAGTAAGCTATATGGTTATGCA
TGTTTGAATATTTAGGAATTGTTCAATAGAGTGAAGCAAACTCCATCATG
gtctgaaaaatatatatcttttacaaagcattgtacttcttttttatcta
agtaaGTCTTTTTCAAATACACATGATCAAGAAGACCACCTGCCAAATGA
GTAGGTTCATTCACTATCAGTTTGTATGACGAGAGCACATCAGCAAGGTC
TTCATTTGCAGCATCCAAAGCATCAATATTGAAATCTCCAAGGATAATCT
GTACTTCATCATATAAAAGTGTTCTCAGTTCTTCAAGAAAAGTATTTCTT
GAAAAGTTAGGTGGCTTGTACAAGAGTAGAAGTGTAATAGGTTGCTCACT
AAATNGCAAAGTCCAACTGTTTTCTCTACATACTTGATCTAAATTTGATC
CTTTTTTTCCTGCTTTTGTATCATCAAGTTTAACATAGATACCTGATATC
TTATTAATTGAATTAAATTTAAAACCCATAACTGTTCCAACTTGACCATT
AACCAGTCTATCTGTTATGTCAATGTTTTTGGAAATTAAAATGCGTGCAC
CAACTTTCAATTCAAGCACACGCGCTAGACCATCTGTTTCTCTTGCTTTA
GCACTTTCGATAAACTACATATCTGAACTTGTCAAATGTTTTGGCACTTC
ATCTTGTGCGGTAATCAAATGCATTTCAGTTGATAGTTCATTAAGTTTCT
TCAAATTGTAAGCATCAACCGGTTTGTTTTCTGCAAAAATATGAGTCACG
TCTGCTGGGTAATTTGGGCTGTCCTTAGAAATGAATCTTGATTTCAAAAG
CTCTTCTTTTTCATCATCTAGTTCACCCACACGAATTTGATTCAAAAGGT
CAACAAAATGTATATCATCTCTTTGCCTCATAACTTCAGTTAATTCAGCC
ATTTGGAAACTTCTCCACAGTTCAAACCCGTATAATTCATCCATAAGGGA
AGGTCTATCATGGGATTCacgtttcttattttcattgcCATTATTGGGAT
CTTTTTTGAGAATAGGAATTTTGTAAATGGGATCCTTAAAAATAGGTGGA
AGTTGATATAAATCGCCGCATAATAAAACTGACTTTCCAGCAAATGGCTT
TTTCATATTAAATATATCCCGCAATCTTTGATCAATTTTTCTGAACAAAC
GATTAGGCACCATAGAAATTTCATCAATCATAATTACTTCAACACATGCA
AgcttcttttgcaaatttgctTTAGATGAACCACTCAATGAAAAGAACTC
TGTTGTAGGAATGATCAATCCTGTATGAATAGTAGTTCCATTCACATTAA
TTGCTGCTACACCAGTTGGAGCAAgcactagaattctttctttaGTTGGT
TCTCCTCCTCTGTACATTAGAAGTTTAGACAAAGAATGATAAATGGTTGT
GAGCAAATGGCTTTTTCCTACACCTCCACCGCCGGTTAAGAAAATACGAA
ATGGCTCAATATTTCTTGGTACTTTCGAAGAAAGGTTCTTTACAAAATCT
CTTCCCCATTTGTGAACAATGTCAAATACTTCTCTTNN Run BLAST on NCBI protein sequence of TCONS_00053489-protein >TCONS_00053489-protein ID=TCONS_00053489-protein|Name=TCONS_00053489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
XREVFDIVHKWGRDFVKNLSSKVPRNIEPFRIFLTGGGGVGKSHLLTTIY
HSLSKLLMYRGGEPTKERILVLAPTGVAAINVNGTTIHTGLIIPTTEFFS
LSGSSKANLQKKLACVEVIMIDEISMVPNRLFRKIDQRLRDIFNMKKPFA
GKSVLLCGDLYQLPPIFKDPIYKIPILKKDPNNGNENKKRESHDRPSLMD
ELYGFELWRSFQMAELTEVMRQRDDIHFVDLLNQIRVGELDDEKEELLKS
RFISKDSPNYPADVTHIFAENKPVDAYNLKKLNELSTEMHLITAQDEVPK
HLTSSDM Run BLAST on NCBI transcript from alignment at scaffold_231:317554..319591 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053489 ID=TCONS_00053489|Name=TCONS_00053489|organism=Clytia hemisphaerica|type=transcript|length=2038bp|location=Sequence derived from alignment at scaffold_231:317554..319591 (Clytia hemisphaerica)
NNAAGAGAAGTATTTGACATTGTTCACAAATGGGGAAGAGATTTTGTAAA
GAACCTTTCTTCGAAAGTACCAAGAAATATTGAGCCATTTCGTATTTTCT
TAACCGGCGGTGGAGGTGTAGGAAAAAGCCATTTGCTCACAACCATTTAT
CATTCTTTGTCTAAACTTCTAATGTACAGAGGAGGAGAACCAACtaaaga
aagaattctagtgcTTGCTCCAACTGGTGTAGCAGCAATTAATGTGAATG
GAACTACTATTCATACAGGATTGATCATTCCTACAACAGAGTTCTTTTCA
TTGAGTGGTTCATCTAAagcaaatttgcaaaagaagcTTGCATGTGTTGA
AGTAATTATGATTGATGAAATTTCTATGGTGCCTAATCGTTTGTTCAGAA
AAATTGATCAAAGATTGCGGGATATATTTAATATGAAAAAGCCATTTGCT
GGAAAGTCAGTTTTATTATGCGGCGATTTATATCAACTTCCACCTATTTT
TAAGGATCCCATTTACAAAATTCCTATTCTCAAAAAAGATCCCAATAATG
gcaatgaaaataagaaacgtGAATCCCATGATAGACCTTCCCTTATGGAT
GAATTATACGGGTTTGAACTGTGGAGAAGTTTCCAAATGGCTGAATTAAC
TGAAGTTATGAGGCAAAGAGATGATATACATTTTGTTGACCTTTTGAATC
AAATTCGTGTGGGTGAACTAGATGATGAAAAAGAAGAGCTTTTGAAATCA
AGATTCATTTCTAAGGACAGCCCAAATTACCCAGCAGACGTGACTCATAT
TTTTGCAGAAAACAAACCGGTTGATGCTTACAATTTGAAGAAACTTAATG
AACTATCAACTGAAATGCATTTGATTACCGCACAAGATGAAGTGCCAAAA
CATTTGACAAGTTCAGATATGTAGTTTATCGAAAGTGCTAAAGCAAGAGA
AACAGATGGTCTAGCGCGTGTGCTTGAATTGAAAGTTGGTGCACGCATTT
TAATTTCCAAAAACATTGACATAACAGATAGACTGGTTAATGGTCAAGTT
GGAACAGTTATGGGTTTTAAATTTAATTCAATTAATAAGATATCAGGTAT
CTATGTTAAACTTGATGATACAAAAGCAGGAAAAAAAGGATCAAATTTAG
ATCAAGTATGTAGAGAAAACAGTTGGACTTTGCNATTTAGTGAGCAACCT
ATTACACTTCTACTCTTGTACAAGCCACCTAACTTTTCAAGAAATACTTT
TCTTGAAGAACTGAGAACACTTTTATATGATGAAGTACAGATTATCCTTG
GAGATTTCAATATTGATGCTTTGGATGCTGCAAATGAAGACCTTGCTGAT
GTGCTCTCGTCATACAAACTGATAGTGAATGAACCTACTCATTTGGCAGG
TGGTCTTCTTGATCATGTGTATTTGAAAAAGACttacttagataaaaaag
aagtacaatgctttgtaaaagatatatatttttcagacCATGATGGAGTT
TGCTTCACTCTATTGAACAATTCCTAAATATTCAAACATGCATAACCATA
TAGCTTACTTAGCCTGCTTATCTGGGGAGGGAGGGGATGGGGGTAGGCCA
ATGAATTCAAGCCAAAGGCTAGAAGTGAATGTGTGTGGTAGGAATTGAAG
CAAGTTCAATCGTATCAAAGTTATGCTGCACGCATGCTTTTCATACAAGA
TTAAAGATTCACTTCTAGCCATCGGCTTAAATTCAATGGGATAGGCAATT
GCGGTGTGAGGGGGATGCAATATTCTTTTTGACTCGATTAGGCATATTGC
AGCTCTTTTTTTCTATTACATTTTGCATCTTCTTTTTATACCTTTCTCAC
CTTGTCTGTGTATGTAAATTTTAAGTTGATTAAAATATACAACAAGGGAA
GGTTGATTTgtagaaaataattaaaaactagGTTTTCATGaacttcaaaa
tatatttttaacagTGAAAATTTACATACAAAGGCAATTTAGAAGaaaca
aagagttttttgcatcaaagattattttgaatatttcg Coding sequence (CDS) from alignment at scaffold_231:317554..319591 >TCONS_00053489 ID=TCONS_00053489|Name=TCONS_00053489|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_231:317554..319591 (Clytia hemisphaerica)
NNAAGAGAAGTATTTGACATTGTTCACAAATGGGGAAGAGATTTTGTAAA
GAACCTTTCTTCGAAAGTACCAAGAAATATTGAGCCATTTCGTATTTTCT
TAACCGGCGGTGGAGGTGTAGGAAAAAGCCATTTGCTCACAACCATTTAT
CATTCTTTGTCTAAACTTCTAATGTACAGAGGAGGAGAACCAACtaaaga
aagaattctagtgcTTGCTCCAACTGGTGTAGCAGCAATTAATGTGAATG
GAACTACTATTCATACAGGATTGATCATTCCTACAACAGAGTTCTTTTCA
TTGAGTGGTTCATCTAAagcaaatttgcaaaagaagcTTGCATGTGTTGA
AGTAATTATGATTGATGAAATTTCTATGGTGCCTAATCGTTTGTTCAGAA
AAATTGATCAAAGATTGCGGGATATATTTAATATGAAAAAGCCATTTGCT
GGAAAGTCAGTTTTATTATGCGGCGATTTATATCAACTTCCACCTATTTT
TAAGGATCCCATTTACAAAATTCCTATTCTCAAAAAAGATCCCAATAATG
gcaatgaaaataagaaacgtGAATCCCATGATAGACCTTCCCTTATGGAT
GAATTATACGGGTTTGAACTGTGGAGAAGTTTCCAAATGGCTGAATTAAC
TGAAGTTATGAGGCAAAGAGATGATATACATTTTGTTGACCTTTTGAATC
AAATTCGTGTGGGTGAACTAGATGATGAAAAAGAAGAGCTTTTGAAATCA
AGATTCATTTCTAAGGACAGCCCAAATTACCCAGCAGACGTGACTCATAT
TTTTGCAGAAAACAAACCGGTTGATGCTTACAATTTGAAGAAACTTAATG
AACTATCAACTGAAATGCATTTGATTACCGCACAAGATGAAGTGCCAAAA
CATTTGACAAGTTCAGATATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053489-exon-scaffold_231-1491911889:317554..319591 | TCONS_00053489-exon-scaffold_231-1491911889:317554..319591 | Clytia hemisphaerica | exon |
| TCONS_00053489-exon-scaffold_231-1510915933:317554..319591 | TCONS_00053489-exon-scaffold_231-1510915933:317554..319591 | Clytia hemisphaerica | exon |
| TCONS_00053489-exon-scaffold_231-1575043694:317554..319591 | TCONS_00053489-exon-scaffold_231-1575043694:317554..319591 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:317554..319591 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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