TCONS_00054041-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054041-protein
Unique NameTCONS_00054041-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054041-protein ID=TCONS_00054041-protein|Name=TCONS_00054041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MTNQVMPRNVERTRSTGPSEVSLVIKYLLFALNVLFWIVGLVMILIGVYA
KTQKSLGEIGNTLPWYMDPANLFIIIGSIVFFLAFVGCIGSLRENVCLLR
TFEYTIDVLLLLEVAIAVYVYVDREKVKKNVEDVLKDTISNYRDDPDLQS
IMDWVQMEMQCCGVAGPEDWEGNIYFNCTNDLNKSGEKCSVPHSCCKDYK
TELNAQCAYGIRKPEVSDVERSQVIYTDGCLQKTFDKFLNQDNLILLVCV
GGAMVLLQLVTTGLAHHLVDGIRRQKSKWNQPNFRGNQNPGYR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034111XLOC_034111Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054041TCONS_00054041Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
IPR018503Tetraspanin_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 27..50
score: 34.93
coord: 66..92
score: 28.29
coord: 93..121
score: 29.71
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 17..288
e-value: 1.5E-47
score: 159.7
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 25..265
e-value: 6.8E-53
score: 179.7
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 121..242
e-value: 1.4E-18
score: 66.6
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 121..238
IPR018503Tetraspanin, conserved sitePROSITEPS00421TM4_1coord: 77..99

Blast
[Close]
BLAST of TCONS_00054041-protein vs. Swiss-Prot (Human)
Match: TSN33 (Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.425e-61
Identity = 110/276 (39.86%), Postives = 166/276 (60.14%), Query Frame = 0 
Query:    6 MPRNVERTRSTGP--SEVSLVIKYLLFALNVLFWIVGLVMILIGVYAKTQKSLGEIGNTLPWYMDPANLFIIIGSIVFFLAFVGCIGSLRENVCLLRTFEYTIDVLLLLEVAIAVYVYVDREKVKKNVEDVLKDTISNYRDDPDLQSIMDWVQMEMQCCGVAGPEDWEGNIYFNCTNDLNKSGEKCSVPHSCCKDYKTE--LNAQCAYGIRKPEVSDVERSQVIYTDGCLQKTFDKFLN--QDNLILLVCVGGAMVLLQLVTTGLAHHLVDGIRRQ 275
            M R      ++G   S VS ++KYLLF  N+LFW++ +VM+ +GVYA+  K        L   +DPA L I++G ++F L F GCIGSLREN+CLL+TF   +  + LL++A  +  +V  +K +  V +++ + I +YRDD DLQ+++D+ Q +  CCG    +DW  N+YFNC+ D N S E+CSVP+SCC     +  +N  C  G++  +   +E S+VIYT+GC+    DK +N    NL LL  V   + + QLV   L+  LV+ I+ Q
Sbjct:    1 MARRPRAPAASGEEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLA--VDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYKDWSQNMYFNCSED-NPSRERCSVPYSCCLPTPDQAVINTMCGQGMQAFDY--LEASKVIYTNGCI----DKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQILVNQIKDQ 267
The following BLAST results are available for this feature:
BLAST of TCONS_00054041-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN331.425e-6139.86Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=... [more]
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