TCONS_00054782-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054782-protein
Unique NameTCONS_00054782-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054782-protein ID=TCONS_00054782-protein|Name=TCONS_00054782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MTWSANMIPLNDGTDLRVSSMIDRIPNLPCSDSQVSCMPDEKVYTSQQIT
VNSSTPNNEDWRTTLNEMDVYLAEDEFTRQNVFNRSPNKPVCLPTSTIVS
TRQRRPSVGRVEEFCSESESDSSSTTYDEPMHESNSLIEHEQTPMGSPVF
HCASNTVKTEVPPTYFESMKCEPTSPSTIFTSTTTLFSQKLNNTTSSLQK
SFINQPPINVRPPPYLDAATMAAKRQTYRQTIPTTRAFPINFSCAPLRDT
QSEIIKNKKTHRCDYPNCNKVYTKSSHLKAHFRTHTGEKPYECQWEGCDW
KFARSDELTRHYRKHTGDKPFKCAHCDKAFSRSDHLALHNRKHTNQNH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034505XLOC_034505Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054782TCONS_00054782Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 291..315
e-value: 8.4E-5
score: 32.0
coord: 321..343
e-value: 0.03
score: 23.5
coord: 261..285
e-value: 0.032
score: 23.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 323..343
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 293..315
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 263..285
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 261..290
score: 15.147
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 291..320
score: 14.44
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 321..348
score: 13.256
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 275..319
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 308..345
NoneNo IPR availableGENE3D3.30.160.60coord: 274..291
e-value: 1.2E-9
score: 38.0
NoneNo IPR availableGENE3D3.30.160.60coord: 128..273
e-value: 2.2E-6
score: 27.2
NoneNo IPR availableGENE3D2.20.28.10coord: 307..321
e-value: 2.5E-6
score: 26.8
NoneNo IPR availableGENE3D3.30.160.60coord: 322..346
e-value: 1.1E-12
score: 47.2
coord: 292..306
e-value: 1.9E-10
score: 40.1
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 261..285
e-value: 0.0047
score: 17.2
coord: 291..315
e-value: 8.6E-5
score: 22.7
coord: 321..343
e-value: 2.3E-4
score: 21.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..135

Blast
[Close]
BLAST of TCONS_00054782-protein vs. Swiss-Prot (Human)
Match: KLF5 (Krueppel-like factor 5 OS=Homo sapiens GN=KLF5 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 3.223e-51
Identity = 83/140 (59.29%), Postives = 105/140 (75.00%), Query Frame = 0 
Query:  209 NVRPPPYLDAATMAAKRQTYRQTIPTTRAFPINF-SCAPLRDTQ--SEIIKNKKTHRCDYPNCNKVYTKSSHLKAHFRTHTGEKPYECQWEGCDWKFARSDELTRHYRKHTGDKPFKCAHCDKAFSRSDHLALHNRKHTN 345
            N+ PPP   AAT+A+K   +   +PTT   P+N  +  P+R  +  +  ++ ++ H CDYP C KVYTKSSHLKAH RTHTGEKPY+C WEGCDW+FARSDELTRHYRKHTG KPF+C  C+++FSRSDHLALH ++H N
Sbjct:  321 NLTPPPSY-AATIASKLAIHNPNLPTT--LPVNSQNIQPVRYNRRSNPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 457
The following BLAST results are available for this feature:
BLAST of TCONS_00054782-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLF53.223e-5159.29Krueppel-like factor 5 OS=Homo sapiens GN=KLF5 PE=... [more]
back to top