TCONS_00055017-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055017-protein
Unique Name	TCONS_00055017-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1012

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055017-protein ID=TCONS_00055017-protein|Name=TCONS_00055017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1012bp
MKEPCGDAEKMKSDLLESMQSLLTEFAPSRSENNQKLKTLSCNLEEIFKD
KATHFKDLTQEMGHWDSVCTQTLTGRFETSKCCECDHTWNVDFKPGVDSQ
CEGDIENQWQFVKISLQSLLLLDMLVSSELKSKVKVQNKQQHKPNVLGAK
DLKIVSGVLQLVLTYGVWPCLLKGIGKPLSNTLPTQLKPVKEENRIKLKV
MLQSLLILIKNKEFCSQVLPLCLGDIISGLVQLGYEPLKAVASGNCHPIC
KHERSWCKEQLNDFIRSSYQPIIIKELMVLQKCAVNSRLSSIKWFLRCLG
DHLSCCLMYDNGVINVIIAILDGMPDQVEWIHYDSIGKVISRPPQKLVTP
VQYYQKIGPQLLQILAHKQGNQHHLMISISTICQIYQLHPSMCLANLIDP
LVKPLADFHNTEKLTMDSDELISTLASLSNLICTKASIIPEQLMLFLSRL
IPILFVINALEIEPLQTLRSKIKETIATICQKNATKHVTELLFQALFNKY
SQHSQDETLVINPGLTINLIERISDSTKNCKTHLVCELHTEIKIDCFVEL
LRNEEMSGHRGDLFVALLQQMIRNVQLTASKEETLSTVSTSGKKEPSKPN
TSLLNIDANLNLLKFNIELISTISAMMDSFGHSVLQNTPQIVAFIKSVLD
LTQDTKVGISEDSFHENTVDLALMLLSTLLASNKLSNADFESLSTMVPSL
DETSRSHGNTSSRAMANDVKTFISTRGSVNANSYTQKTQRGTTENSEDNL
TSERCYIKALDELLDPLLPTRGHALRQLSKLLKHKNTWALKDEEKLFEIF
ETNLRHDDTYLYLAAVDGLMTLVDVRHDVVLPLLCRRFIDMKTNELDMTA
SHNRMKLCEAIIRSLPICGEILPLYKDLLMNALSCGVLDADEFIRASSLS
GIGELCHLLKFSIGSLIVEVFSCINHVVSTDKSIEVRKAGVQVVAQLLKG
VDTALLQTIPNELLPIYRWLKIIKISEKDEMTSLHIDNALTILDEIMKEL
MTPRTLITQINM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034658	XLOC_034658	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055017	TCONS_00055017	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019451	Rtp1_C1
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019451	RNA polymerase II assembly factor Rtp1, C-terminal	PFAM	PF10363	RTP1_C1	coord: 758..870 e-value: 1.7E-24 score: 86.0
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 13..510 e-value: 0.012 score: 13.5 coord: 518..1002 e-value: 1.1E-15 score: 56.5
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 618..972

Blast

[Close]

BLAST of TCONS_00055017-protein vs. Swiss-Prot (Human)
Match: TNG6 (Transport and Golgi organization protein 6 homolog OS=Homo sapiens GN=TANGO6 PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 2.984e-74
Identity = 256/968 (26.45%), Postives = 441/968 (45.56%), Query Frame = 0

Query:  144 PNVLGAKDLKIVSGVLQLVLTYGVWPCLLKGIGKPLSNTLPTQLKPVKEE---------NRIKLKVMLQSLLILIKNKEFCSQVLPLCLGDIISGLVQLGYEPLK-AVASGNCHPICKHERSWCKEQLNDFIRSSYQPIIIKELMVLQKCAVNS--------RLSSIKWFLRCLGDHLSCCLMYDNGVINVIIAIL-----------DGMPDQVEWIHYDSIGKVISRPPQKLVTPVQYYQKIGPQLLQIL--AHKQGNQHHLMISISTICQIYQLHPSMCLANLIDPLVKPLADFHNTEKLT---MDSDELISTLASLSNLI--CTKASIIP-EQLMLFLSRLIPIL---FVINALEIEPLQTLRSKIKETIATICQK-NATKHVTELLFQALFNKY--SQHSQDETLV-INPGLTINLIERISDSTKNCKTHLVCELHTEI-KIDCFVELLRNEEMSGHRGDLFVALLQQMIRNVQLTASKEETLSTVSTSGKKEPSKPNTSLLNIDANLNLLKFNIE----LISTISAMMDSFGHSVLQNTPQIVAFIKSVLDLTQDTKVGISEDSFHENTVDLALMLLSTLLASN-KLSNADFESLSTMVPSLDETSRSHGNTSSRAMANDVKTFIST-----------------------------------RGSVNANSYTQKTQRGTTE----------------NSEDNLTSER---CYIKALDELL----DPLLPTRGHALRQLSKLLKHKNTWALKDEEKLFEIFETNLRHDDTYLYLAAVDGLMTLVDVRHDVVLPLLCRRFIDMKTNELDMTASHNRMKLCEAIIRSLPICGEILPLYKDLLMNALSCGVLDADEFIRASSLSGIGELCHLLKFSIGSLIVEVFSCINHVVSTDKSIEVRKAGVQVVAQLLKGVDTALLQTIPNELLPIYRWLKIIKISEKDEMTSLHIDNALTILDEIMKELMTP 1003
            P+ L     K V  VLQ V+T G+ P L+ G+G PL     T+   V ++            +L    ++LL + ++    S +     GDI +GL QLG+ P K  + +     + + ER+  +  L D +   YQP+ ++EL++LQ     S        R  +  W  R  G  LS  LM  NGV  V+  IL           D      +W   D I K+++  PQ+ ++P  YY+ I PQ+L +     K   +    ++ +T   + +  P +    L+ P++ PL    NT +L+   M    ++ T   LS  I    K  ++  E L + +  L+P+L   F++     + +  +RS  +E +  I  K    K +  L   A  +K   S HS  +  V    G+ I + E ISD  ++    L  ++ +E  +++   +LL + +  G  GD F+  L+++       AS+ ET        K EP   + SLL ++ +  LL    E    ++  ++ + +     +  N  Q+V F+ + L     +    +E +    T+ +++ L++ +L    +L ++DF  L  ++P L++ S ++ +   + +A D++  IST                                   R +  A+S+ ++ Q   T                 N     TS++      + L E+L    DP +PTR  ALR LS  ++ +   AL+ +EKL +IF  NL H+DT++YL+A+ G+  L DV  + +LP L  ++   K    D      RMK+ E ++R +   G+++  Y++ L++    GV D D   RASSL+ +GELC  L F +GS++ EV +C+  V  TD  ++VR+A + VV  LL+G+     + +   L  +Y  LK +   E D++  LH   AL  LD+IMK  + P
Sbjct:  134 PDALSISQQKTVQFVLQFVVTLGICPYLMPGVGVPLRYR--TEFGAVVQDVVCFDAAPDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQLGFCPTKRKLLTPAEEVLTEEERTLSRGALRDMLDQVYQPLAVRELLILQGGPPQSCTDVKTQMRCRAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEVTAADWKKCDLIAKILASCPQQSLSPENYYRDICPQVLDLFHFQDKLTARQFQRVATTTFITLSRERPHLAAKYLLQPVLAPLHRCLNTAELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLGVLFLLYCFTKQSVSHIRSLCQEILLWILGKLERKKAIASLKGFAGLDKAVPSLHSLCQFRVATQGGIMITIKEAISDEDED--EALYQKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLKELTH----VASENET------ELKTEPFS-SKSLLELEQHQTLLVEGQERKLLVLQLMAVLCERMSEQIFTNVTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQEVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQGVALLSDVYPEKILPDLLAQYDSSK----DKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIHTFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRAAIHVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKNFLFP 1082

The following BLAST results are available for this feature:

BLAST of TCONS_00055017-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055017-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TNG6	2.984e-74	26.45	Transport and Golgi organization protein 6 homolog...	[more]

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TCONS_00055017-protein (polypeptide) - C. hemisphaerica