TCONS_00056354-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056354-protein
Unique NameTCONS_00056354-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056354-protein ID=TCONS_00056354-protein|Name=TCONS_00056354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MMFSMDSPTRDSPTTDKRHSTSPVTRHSTSPVNSPSPPLERQKKPFSIDY
LLNFSPTKKTTLIRQSPPVEYIQPPFHTRPPHFINDRLKEPEDESKVPSP
TLLTNTSRKRELDPTIEFQWDLSKCFLRKHKANRKPRTPFSASQLLTLEQ
KFKRKQYLSINERSELSAQLNLTETQIKIWFQNRRAKEKRLKEAELEKTV
RTFSPGSVTSPNYSPCSCCYSGSSVFNYPPVSCSRISRFMH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035505XLOC_035505Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056354TCONS_00056354Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR000047HTH_motif
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 177..197
NoneNo IPR availableGENE3D1.10.10.60coord: 125..202
e-value: 6.5E-24
score: 82.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableCDDcd00086homeodomaincoord: 134..192
e-value: 5.97506E-22
score: 85.3728
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 180..189
score: 79.02
coord: 155..166
score: 40.83
coord: 170..180
score: 66.89
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 162..171
score: 38.93
coord: 171..187
score: 60.99
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 133..195
e-value: 2.4E-26
score: 103.5
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 134..190
e-value: 4.0E-22
score: 77.7
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 131..191
score: 20.973
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 166..189
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 130..195

Blast
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BLAST of TCONS_00056354-protein vs. Swiss-Prot (Human)
Match: MSX2 (Homeobox protein MSX-2 OS=Homo sapiens GN=MSX2 PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.179e-34
Identity = 66/110 (60.00%), Postives = 79/110 (71.82%), Query Frame = 0 
Query:  125 CFLRKHKANRKPRTPFSASQLLTLEQKFKRKQYLSINERSELSAQLNLTETQIKIWFQNRRAKEKRLKEAELEK---TVRTFSPGSVTSPNYSPCSCCYSGSSVFN--YP 229
            C LRKHK NRKPRTPF+ SQLL LE+KF++KQYLSI ER+E S+ LNLTETQ+KIWFQNRRAK KRL+EAELEK     +   P S + P   P S     +S++   YP
Sbjct:  134 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF--PISSPLQAASIYGASYP 241
The following BLAST results are available for this feature:
BLAST of TCONS_00056354-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSX21.179e-3460.00Homeobox protein MSX-2 OS=Homo sapiens GN=MSX2 PE=... [more]
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