TCONS_00060093-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060093-protein
Unique NameTCONS_00060093-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060093-protein ID=TCONS_00060093-protein|Name=TCONS_00060093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MSDVSEHDSDSDTEILKKEEKANKQQLKTHVISSGPQIVNAPQVYTRPSV
TPTSTITTENTESAGGATDGNVLDELKHQAESAVADQEKPEWQKYLDQNQ
QTGAYTYTDPNDGTVYEWDETKRGWIPKIDEDFIAMYQANYGFTATGEHD
PNVNAETDEKPGAGDEKNTDDDKTKKSKAADPSTSNNSEIGKKRKAAEQK
KEWFDIDPKKNNNVYVSGLPESTSEEEFEELMSKCGIIMDDDSGKKKLKL
YKTPDGKVKGDGRCCYLKHESVVLACQLLDEGDFKGSKIKVELAVFELKG
QFDPNKKPKKKKKKIKKGKGQDKLLDWVDRPKKRSKFDRIVI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037808XLOC_037808Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060093TCONS_00060093Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034392TatSF1-like_RRM1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 213..292
e-value: 9.6E-9
score: 45.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 212..296
score: 9.388
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 180..294
NoneNo IPR availableGENE3D3.30.70.330coord: 2..321
e-value: 1.8E-15
score: 56.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
IPR034392TatSF1-like, RNA recognition motif 1CDDcd12281RRM1_TatSF1_likecoord: 211..300
e-value: 1.58281E-35
score: 124.568

Blast
[Close]
BLAST of TCONS_00060093-protein vs. Swiss-Prot (Human)
Match: HTSF1 (HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.877e-48
Identity = 112/244 (45.90%), Postives = 148/244 (60.66%), Query Frame = 0 
Query:  110 PNDGTVYEWDETKRGWIPKIDEDFIAMYQANYGFTATGEHDP-----NVNAETDEKPGAGDEKNTDDDKTKKSKAADPSTSNNSEIGKKRKAAEQKKEWFDIDPKKNNNVYVSGLPESTSEEEFEELMSKCGIIMDDDSGKK-KLKLYKTPDGKVKGDGRCCYLKHESVVLACQLLDEGDFKGSKIKVELAVFELKGQFDPNKKPKKKKKKIKKGKGQDKLLDWVDRPKKRS-----KFDRIVI 342
            P D T YEWD  K+ W PKI EDFIA YQANYGF+  G         +V+A T E+P              + KA +P+ +     G+KRKA   +  WF ++  +N NVYVSGLP   + +EF +LMSK GIIM D   ++ K+KLYK   G +KGDG CCYLK ESV LA +LLDE + +G K+ VE+A F+LKG++D +KK KK K   KK   Q K LDW  RP++R+     + +R+VI
Sbjct:   45 PTD-TPYEWDLDKKAWFPKITEDFIATYQANYGFSNDGASSSTANVEDVHARTAEEP-------------PQEKAPEPTDARKK--GEKRKA---ESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDW--RPERRAGPSRMRHERVVI 267
The following BLAST results are available for this feature:
BLAST of TCONS_00060093-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HTSF14.877e-4845.90HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATS... [more]
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