TCONS_00060658-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060658-protein
Unique NameTCONS_00060658-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060658-protein ID=TCONS_00060658-protein|Name=TCONS_00060658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
MEVFTKQRHHLMKKLLDAVKQCQVNFGGKTMLATEKESSVMLVIKQYEQA
LLHGLKKNKFLEKINTLTETFRQVTQKMIPEIDDNNYWGVVKEVLSPLDV
KHIESCEGVTTDTGKARVWLRQALNEHSLERHLNAMLANGNLLRNYYESW
ALVLDEEVASNLPVMARGLSSIIFALEINGEDLNKPFQPLVFPTTEKTHR
RVNSNPLPVFAGFDTEPNIVKKIKKKKRKVVEATINDLEEIPDEHSLSQS
YTTNSSLENLILQSKQDDDRILSPQSGASSDRSSTKDFETLSGRALETRS
APVSPVPLSYGDNTNTENLSSADSPTPNDRVSSQKSISKDNTKRNSSDNL
TSEPTEENTKQTENTIANINNTTKLQDKLKDTPVLQNDKTNGLRKTGFDN
VTTSSNKNFSNALTLESNSIDILQKEKDNLIDENPLPKDNLTTNHSNEPK
NISYGLQKSSSVITKENHGGARSRTSKLIPDDNILTEAKNTISKTPSYND
STTDNTNVLDLNAPQVKSTPLEINNQLHCGAIIAGDSEDAD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038145XLOC_038145Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060658TCONS_00060658Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004012Run_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004012RUN domainSMARTSM00593893paper3coord: 116..179
e-value: 6.7E-17
score: 72.2
IPR004012RUN domainPFAMPF02759RUNcoord: 47..178
e-value: 1.4E-17
score: 63.8
IPR004012RUN domainPROSITEPS50826RUNcoord: 34..181
score: 28.175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..399
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..453
NoneNo IPR availableSUPERFAMILY140741RUN domain-likecoord: 6..184

Blast
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BLAST of TCONS_00060658-protein vs. Swiss-Prot (Human)
Match: SNX29 (Sorting nexin-29 OS=Homo sapiens GN=SNX29 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 2.463e-40
Identity = 79/188 (42.02%), Postives = 117/188 (62.23%), Query Frame = 0 
Query:    7 QRHHLMKKLLDAVKQCQVNFGGKTMLATEKESSVMLVIKQYEQALLHGLKKNKFLEKINTLTET-FRQVTQKMIPEIDDNNYWGVVKEVLSPLDVKHIESCEGVTTDTGKARVWLRQALNEHSLERHLNAMLANGNLLRNYYESWALVLDEEVASNLPVMARGLSSIIFALEINGEDLN--KPFQPLV 191
            +R  L+++LLDAVKQCQ+ FGG+  +A++ +S V  +  Q+E  L HGLK+++ L     LT    +Q          +  +W  VKEVL+  +++   S   + +D G+ R WLR ALNEHSLER+L+ +LA+   L  +YE W+ V+DEE +S LP MA GL+SI+FA+ I+ +DLN    F P V
Sbjct:    9 KRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRSRGL----ALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTV 192
The following BLAST results are available for this feature:
BLAST of TCONS_00060658-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNX292.463e-4042.02Sorting nexin-29 OS=Homo sapiens GN=SNX29 PE=1 SV=... [more]
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