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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060658 ID=TCONS_00060658|Name=TCONS_00060658|organism=Clytia hemisphaerica|type=transcript|length=1974bpRun BLAST on NCBI protein sequence of TCONS_00060658-protein >TCONS_00060658-protein ID=TCONS_00060658-protein|Name=TCONS_00060658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp MEVFTKQRHHLMKKLLDAVKQCQVNFGGKTMLATEKESSVMLVIKQYEQARun BLAST on NCBI transcript from alignment at scaffold_348:499323..513678+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060658 ID=TCONS_00060658|Name=TCONS_00060658|organism=Clytia hemisphaerica|type=transcript|length=14356bp|location=Sequence derived from alignment at scaffold_348:499323..513678+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_348:499323..513678+ >TCONS_00060658 ID=TCONS_00060658|Name=TCONS_00060658|organism=Clytia hemisphaerica|type=CDS|length=16230bp|location=Sequence derived from alignment at scaffold_348:499323..513678+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060658 vs. Swiss-Prot (Human)
Match: SNX29 (Sorting nexin-29 OS=Homo sapiens GN=SNX29 PE=1 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 3.424e-39 Identity = 78/187 (41.71%), Postives = 115/187 (61.50%), Query Frame = 2
Query: 368 QRHHLMKKLLDAVKQCQVNFGGKTMLATEKESSVMLVIKQYEQALLHGLKKNKFLEKINTLTETFRQVTQKMIPEIDDNNYWGVVKEVLSPLDVKHIESCEGVTTDTGKARVWLRQALNEHSLERHLNAMLANGNLLRNYYESWALVLDEEVASNLPVMARGLSSIIFALEINGEDLN--KPFQPLV 922
+R L+++LLDAVKQCQ+ FGG+ +A++ +S V + Q+E L HGLK+++ L + K E +W VKEVL+ +++ S + +D G+ R WLR ALNEHSLER+L+ +LA+ L +YE W+ V+DEE +S LP MA GL+SI+FA+ I+ +DLN F P V
Sbjct: 9 KRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETE---PVFWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTV 192 The following BLAST results are available for this feature:
BLAST of TCONS_00060658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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