TCONS_00060958-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060958-protein
Unique NameTCONS_00060958-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length108

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060958-protein ID=TCONS_00060958-protein|Name=TCONS_00060958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MEITKVFKACVKAAKTRNKVDTTSDILPRSKKKKSDEVSFNSKAIEVVGG
ITKFKTFLVDCQSDYLDEFSHLSFSSSMQDEERDQIDEDAQNFIKSCSTA
IHKLKPSG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038266XLOC_038266Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060958TCONS_00060958Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019529Syntaxin-18_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019529SNARE-complex protein Syntaxin-18, N-terminalPFAMPF10496Syntaxin-18_Ncoord: 1..86
e-value: 4.5E-15
score: 55.6
NoneNo IPR availableGENE3D1.20.58.70coord: 32..108
e-value: 1.4E-5
score: 24.3

Blast
[Close]
BLAST of TCONS_00060958-protein vs. Swiss-Prot (Human)
Match: STX18 (Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.726e-20
Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = 0 
Query:    1 MEITKVFKACVKAAKTRNKV----------DTTSDILPRSKKKKSDEVSFNSKAIEVVGGITKFKTFLVDCQSDYLDEFSH-LSFSSSMQDEERDQIDEDAQNFIKSCSTAIHKLK 105
            ++IT +F+A VK  KTRNK            +  ++  RS + K D   F+S+A EV+  I K + FL++ + DY++ +SH +S    M D ERDQID+DAQ F+++CS AI +L+
Sbjct:    3 VDITLLFRASVKTVKTRNKALGVAVGGGVDGSRDELFRRSPRPKGD---FSSRAREVISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLR 115
The following BLAST results are available for this feature:
BLAST of TCONS_00060958-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX182.726e-2039.66Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1[more]
back to top