TCONS_00062828-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062828-protein
Unique NameTCONS_00062828-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062828-protein ID=TCONS_00062828-protein|Name=TCONS_00062828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MASDEATLKGLNDLLDEFFGPTSNNDRKRQIEELLNNFGLQDGAWRQCIY
FLTKSSNQYVQMYSFSIFENLINQRWHGLLGEDKQQIRKFLYNYMVNKYN
AVPPFIRNKSIKSVVIIGRYDWPMFYPNFFSNIIKLLQNPDTSLVGVLAL
QMISEEFISPREDLSMQRRQELKESLLQHIPNALHILTELLTSISHKFKH
IVSTVTPPPSPIQRSPYTTPNHSPIHRLTVPGSTTSPQKIEAVVMSAQSE
ELCIAIFDCLTQYISWLPLSRFITPSLVTKIFNYAEYGCNLAVMKGSDKV
IGTKVGINAMSCINEILSKKFIPAEYESFLFQMFQQTFKLLQVMTSGSEG
GVLKTVDERCDFVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039357XLOC_039357Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062828TCONS_00062828Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR013598Exportin-1/Importin-b-like
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0008536Ran GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005488 binding
molecular_function GO:0008536 Ran GTPase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001494Importin-beta, N-terminal domainSMARTSM00913IBN_N_2coord: 31..97
e-value: 4.8E-7
score: 39.4
IPR001494Importin-beta, N-terminal domainPFAMPF03810IBN_Ncoord: 32..96
e-value: 1.4E-11
score: 44.0
IPR001494Importin-beta, N-terminal domainPROSITEPS50166IMPORTIN_B_NTcoord: 31..97
score: 9.396
IPR013598Exportin-1/Importin-beta-likePFAMPF08389Xpo1coord: 103..285
e-value: 9.8E-17
score: 61.3
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..358
e-value: 8.6E-34
score: 116.3
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 249..342
coord: 11..203

Blast
[Close]
BLAST of TCONS_00062828-protein vs. Swiss-Prot (Human)
Match: XPO6 (Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 1.217e-96
Identity = 160/378 (42.33%), Postives = 237/378 (62.70%), Query Frame = 0 
Query:    1 MASDEATLKGLNDLLDEFFGPTSNNDRKRQIEELLNNFGLQDGAWRQCIYFLTKSSNQYVQMYSFSIFENLINQRWHGLLGEDKQQIRKFLYNYMVNKYNAVPPFIRNKSIKSVVIIGRYDWPMFYPNFFSNIIKLLQNPDTSLVGVLALQMISEEFISPREDLSMQRRQELKESLLQHIPNALHILTELLTSISHKFKHIVSTVTPPPSP-------IQRSPYTTPNHSPIHRLTVPGSTTSPQKIEAVVMSAQSEELCIAIFDCLTQYISWLPLSRFITPSLVTKIFNYAEYGCN-----LAVMKGSDK--VIGT---KVGINAMSCINEILSKKFIPAEYESFLFQMFQQTFKLLQVMTSGSEGGVLKTVDERCD 361
            MAS+EA+L+ L  L+ EFF   + N+RKR+IEELLNNF  Q GAWR C+YFL+ + N YV MYS ++FENLIN+ W G+  +DK +IR  L   ++  +  +P FIRNK  K +V IGR DWPMFY +FF+NI++L+Q+P T+ +G++ L+  SEE   PREDLS+ R++EL++ LL  +   L +LT +L ++    KH V+  TPPPSP       +  +   +P+ + +    +P            ++  +SE +C    +CL    SW+PLS  ITPSL+T IF++A +GC+     +A + GS +  V G    ++G+ AMSCINE++SK  +P E+E +L +MFQQTF LLQ +T  +    +K+  E  D
Sbjct:    1 MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYVMMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQDWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQVQTVLGLLTGILETVWD--KHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIP------------ILDVESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCVSGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRLEELD 364
The following BLAST results are available for this feature:
BLAST of TCONS_00062828-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPO61.217e-9642.33Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1[more]
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